Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00295 ATGCATTCCAACAACTTGGGCTATAATTTTGTGCTTTTATTATGTTGTAGGCGACACAAAGAGAAAAAGGAAGAAGGAACAGAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTTAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGCTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTGATGGTAAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGCTAATGGATCCACTGGACTTATCGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCACTTGATGAAAGTGGGCACTGTAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTCGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAGATTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGAGGATTGTCCTTGAATGCATGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCAGTTGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTCGCAGCTGTGCCCGAGGGTTCTCCCCATTCTTCTATTCCTGCAGTATCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGCTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAAACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTTCTGGACAGCAGATAA 1269 0.4334 MHSNNLGYNFVLLLCCRRHKEKKEEGTEPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEIGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAVPEGSPHSSIPAVSGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEETQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFLDSR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00295 422 Gene3D - 16 124 IPR012677 -
Phac7g00295 422 CDD RRM3_RBM39_like 327 409 - -
Phac7g00295 422 NCBIfam splicing factor, CC1-like family 17 420 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac7g00295 422 SUPERFAMILY RNA-binding domain, RBD 324 408 IPR035979 GO:0003676
Phac7g00295 422 FunFam CC1-like, splicing factor 137 245 - -
Phac7g00295 422 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 18 420 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac7g00295 422 SMART rrm2_1 143 215 IPR003954 GO:0003676
Phac7g00295 422 SMART rrm2_1 329 407 IPR003954 GO:0003676
Phac7g00295 422 SMART rrm1_1 329 407 IPR000504 GO:0003723
Phac7g00295 422 SMART rrm1_1 143 215 IPR000504 GO:0003723
Phac7g00295 422 SMART rrm1_1 39 111 IPR000504 GO:0003723
Phac7g00295 422 Gene3D - 323 422 IPR012677 -
Phac7g00295 422 SUPERFAMILY RNA-binding domain, RBD 139 234 IPR035979 GO:0003676
Phac7g00295 422 Gene3D - 136 243 IPR012677 -
Phac7g00295 422 FunFam RNA-binding protein 39 isoform X1 31 123 - -
Phac7g00295 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 219 IPR000504 GO:0003723
Phac7g00295 422 FunFam Splicing factor, CC1-like protein 323 422 - -
Phac7g00295 422 CDD RRM1_RBM39_like 39 111 - -
Phac7g00295 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 411 IPR000504 GO:0003723
Phac7g00295 422 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 233 346 IPR029123 -
Phac7g00295 422 SUPERFAMILY RNA-binding domain, RBD 30 130 IPR035979 GO:0003676
Phac7g00295 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Phac7g00295 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 404 IPR000504 GO:0003723
Phac7g00295 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Phac7g00295 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00295 Phac-Chr7 1386160 1395513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00295 39 205 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.07e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00295 K13091 - gmx:100789839 743.036