Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac7g00293 | ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGATTAATGGTAGTGACAGAAGTGTGAAGTCCGAAGAGAGAGGGCATGGTCGGAGTTCTAAGCGCAAGAGTGATGAAAAAGATGACGACGACGTTGAATTCCATTCCAAGCATTCAAAGTCTGGAGATGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAGGCTCCTCTCGTCATGGTTTGCCGTCCAGAGATGGAGAGAAGGAGAAAGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGAGAGAGAGACCATGAGAGCAATGATTCGAAGAGAGGTAGGGAGAGAGACAGAGATCGTGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAGGAACACCGCAGTAGAAGTAGATCCGAAAAGCACCGGGGTGATCTGGATGACAGAGACAGAGAAACAGTTTTTGATAAAGACAGAGAAATAAGCCGGGATAAAGATTTCAGAGACAGAGAAAGGGTGAGGGAAACAAGGGAACGAGTTAGAGAAACCAGGCGACACAAAGAGAAAAAGGAAGAAGGAACAGAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTTAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGCTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTGATGGTAAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGCTAATGGATCCACTGGACTTATCGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCACTTGATGAAAGTGGGCACTGTAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTCGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAGATTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGAGGATTGTCCTTGAATGCATGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCAGTTGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTCGCAGCTGTGCCCGAGGGTTCTCCCCATTCTTCTATTCCTGCAGTATCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGCTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAAACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTTCTGGACAGCAGATAA | 1812 | 0.4465 | MDFDEYEYLEKTVENAEVKKEKHRINGSDRSVKSEERGHGRSSKRKSDEKDDDDVEFHSKHSKSGDDSRHYERKRERGSSRHGLPSRDGEKEKDQHRSSGGSRDRKRDRERDHESNDSKRGRERDRDRERDQERDRRDRGSESEQEHRSRSRSEKHRGDLDDRDRETVFDKDREISRDKDFRDRERVRETRERVRETRRHKEKKEEGTEPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEIGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAVPEGSPHSSIPAVSGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEETQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFLDSR* | 604 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac7g00293 | 603 | SMART | rrm1_1 | 220 | 292 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | SMART | rrm1_1 | 324 | 396 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | SMART | rrm1_1 | 510 | 588 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | SUPERFAMILY | RNA-binding domain, RBD | 320 | 414 | IPR035979 | GO:0003676 | |
Phac7g00293 | 603 | CDD | RRM3_RBM39_like | 508 | 590 | - | - | |
Phac7g00293 | 603 | NCBIfam | splicing factor, CC1-like family | 102 | 601 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Phac7g00293 | 603 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 414 | 527 | IPR029123 | - | |
Phac7g00293 | 603 | MobiDBLite | consensus disorder prediction | 16 | 167 | - | - | |
Phac7g00293 | 603 | SUPERFAMILY | RNA-binding domain, RBD | 505 | 589 | IPR035979 | GO:0003676 | |
Phac7g00293 | 603 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 219 | 296 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 310 | IPR035979 | GO:0003676 | |
Phac7g00293 | 603 | Gene3D | - | 504 | 603 | IPR012677 | - | |
Phac7g00293 | 603 | Gene3D | - | 318 | 424 | IPR012677 | - | |
Phac7g00293 | 603 | FunFam | Splicing factor, CC1-like protein | 504 | 603 | - | - | |
Phac7g00293 | 603 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 323 | 400 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | FunFam | RNA-binding protein 39 isoform X1 | 212 | 304 | - | - | |
Phac7g00293 | 603 | CDD | RRM1_RBM39_like | 220 | 292 | - | - | |
Phac7g00293 | 603 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 509 | 592 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | MobiDBLite | consensus disorder prediction | 182 | 217 | - | - | |
Phac7g00293 | 603 | Coils | Coil | 184 | 204 | - | - | |
Phac7g00293 | 603 | FunFam | CC1-like, splicing factor | 318 | 426 | - | - | |
Phac7g00293 | 603 | SMART | rrm2_1 | 324 | 396 | IPR003954 | GO:0003676 | |
Phac7g00293 | 603 | SMART | rrm2_1 | 510 | 588 | IPR003954 | GO:0003676 | |
Phac7g00293 | 603 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 601 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Phac7g00293 | 603 | Gene3D | - | 152 | 304 | IPR012677 | - | |
Phac7g00293 | 603 | Coils | Coil | 6 | 26 | - | - | |
Phac7g00293 | 603 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 325 | 394 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 229 | 288 | IPR000504 | GO:0003723 | |
Phac7g00293 | 603 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 533 | 585 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac7g00293 | Phac-Chr7 | 1386160 | 1395513 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac7g00293 | 220 | 386 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 2.16e-13 | 71.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac7g00293 | K13091 | - | gmx:100789839 | 899.812 |