Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00288 ATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTGATGGTAAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACAGCTGTTGCTAATGGATCCACTGGACTTATCGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCACTTGATGAAAGTGGGCACTGTAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTCGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAGATTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGAGGATTGTCCTTGAATGCATGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCAGTTGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTCGCAGCTGTGCCCGAGGGTTCTCCCCATTCTTCTATTCCTGCAGTATCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGCTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAAACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTTCTGGACAGCAGATAA 1059 0.44 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEIGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAVPEGSPHSSIPAVSGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEETQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFLDSR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00288 352 Gene3D - 1 53 IPR012677 -
Phac7g00288 352 NCBIfam splicing factor, CC1-like family 1 350 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac7g00288 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 334 IPR000504 GO:0003723
Phac7g00288 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Phac7g00288 352 SUPERFAMILY RNA-binding domain, RBD 1 60 IPR035979 GO:0003676
Phac7g00288 352 SMART rrm1_1 259 337 IPR000504 GO:0003723
Phac7g00288 352 SMART rrm1_1 73 145 IPR000504 GO:0003723
Phac7g00288 352 SUPERFAMILY RNA-binding domain, RBD 70 164 IPR035979 GO:0003676
Phac7g00288 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 341 IPR000504 GO:0003723
Phac7g00288 352 FunFam CC1-like, splicing factor 67 175 - -
Phac7g00288 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Phac7g00288 352 Gene3D - 66 173 IPR012677 -
Phac7g00288 352 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 163 276 IPR029123 -
Phac7g00288 352 Gene3D - 253 352 IPR012677 -
Phac7g00288 352 FunFam Splicing factor, CC1-like protein 253 352 - -
Phac7g00288 352 CDD RRM3_RBM39_like 257 339 - -
Phac7g00288 352 SUPERFAMILY RNA-binding domain, RBD 254 338 IPR035979 GO:0003676
Phac7g00288 352 SMART rrm2_1 259 337 IPR003954 GO:0003676
Phac7g00288 352 SMART rrm2_1 73 145 IPR003954 GO:0003676
Phac7g00288 352 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 350 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00288 Phac-Chr7 1386160 1395513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00288 2 135 Eukaryotic Initiation Factors Gene Family AT4G34110 31.618 1.47e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00288 K13091 - gmx:100789839 639.802