Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00234 ATGATGTCTTCCGGCGGGGACGGTGGGAAGCCATTTTTCTGCCACGTGTGCAATCAGAGGATCACGTGCACCGATGAGTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGTTTCGTGGAAGAATGGAACCCTAACAACCATAGCCATAACCCTAATTTTACCCATGAGAGTGGTGGAGAATCTTTGGATCCCGAATTTCCGTTCGATTTGATCGATTCCATGCTCCCTCTCTTGCTCAACCCCGGTTCCAGGACCCGCCGCGAAGCCGACATGTTCGACCCGAGGACCTACCTCCAGAACTACCTTCAGAGCCTTCGCGCTGACGGCGCCAACATTCAATTCTCCTTCGGCCACCCTTCCGACAACTGGTTTCGCTCCCCGGCGAACCTTGGCGACTACTACCTCGGCCCCGGCTTTGAGCAGTTGATTCAGCTCCTCGCCGACAACGATCCCAACCGTTACGGCACGCCGCCAGCCGCCAAGGACGCCGTCGAGAATCTCCCCACAGTCACCGTCGACGACGAGTTGCTGAACTCGGAGATGAACCAATGCGCGGTCTGCCAGGACGAGTTCGAGAAGGACACGCAGGTGAAGCAGATGCCGTGCAGGCACGCGTACCACGCTGACTGCTTGATTCCTTGGCTCCGGCTGCATAACTCGTGCCCTGTGTGTCGGTATGAACTGCCCACCGATGACTCGGAATATGAGAATCGGACACGGGCCAGTGGCGATGGTGGTGGTGGGTCGAGGTCTGATGTGAGCGATAGTGGCAGTGGCGCGGGAGGGGGAAATAATAGACCTGTTCACAGGACTGTCAGAATATTTTTGCGGCCTCCTTCTGATGGAGGTGACTCGGTGCAGGACAGTGCCGAAAGGGGATGGGAAAGTTGGGATTGA 897 0.5708 MMSSGGDGGKPFFCHVCNQRITCTDESEPFCPICLEGFVEEWNPNNHSHNPNFTHESGGESLDPEFPFDLIDSMLPLLLNPGSRTRREADMFDPRTYLQNYLQSLRADGANIQFSFGHPSDNWFRSPANLGDYYLGPGFEQLIQLLADNDPNRYGTPPAAKDAVENLPTVTVDDELLNSEMNQCAVCQDEFEKDTQVKQMPCRHAYHADCLIPWLRLHNSCPVCRYELPTDDSEYENRTRASGDGGGGSRSDVSDSGSGAGGGNNRPVHRTVRIFLRPPSDGGDSVQDSAERGWESWD* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00234 298 SMART ring_2 184 224 IPR001841 -
Phac7g00234 298 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Phac7g00234 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 229 - -
Phac7g00234 298 FunFam E3 ubiquitin-protein ligase RING1-like 145 231 - -
Phac7g00234 298 SUPERFAMILY RING/U-box 163 232 - -
Phac7g00234 298 MobiDBLite consensus disorder prediction 233 298 - -
Phac7g00234 298 Pfam Ring finger domain 182 225 IPR001841 -
Phac7g00234 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00234 Phac-Chr7 1126280 1129030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00234 128 240 C3H Transcription Factor Family AT5G01980 46.903 3.00e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00234 K11982 - gmx:100785289 415.616