Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00206 ATGGATAGTTGTATATATATTAGTTCGTCTGATGATGACTTGGAGGAGATAGATGTTCGAAAGAGAACTCTTCCACAATGGGCTACACCTACTGAAAGGAGTTCAGATTATGGTAGGCGGGATAATTCTTCAAGAGGGGCTAATAGTTCAAGCCTAAGTTCTTCTAATGTTTATAATCATTCACAAATCAAACCTCATACACAACCTGTGTCCAGCACCAATGCACCCAACCACAGAAATGCACGAAGTGATGAACCTTCCTACCATGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAATTTCAAATTCTCATAGTGCAGATTATGAGAAAATGTCATCTCAGCAAACTTTCAAGAAGACCCTTCCTTCATCTCTTCCGCCTTCTGCAACAAGGGTCCTTCCTTCTTCTTTATTTGCGTCAGACATCAGATTAAGCAAGTTAAAAGATAACACAGGCAATAGTCATCTTCATGATGCATACAAGAATCGTCGCCAGGGAGTAGGGCCTAGCACATCCGGTGACAGGGGCTACATTCGTGACAGTTTTAGCAGGGGCTTTGACGGAGATCATTTATTTTATCAAAATGGTGGGAACAGGATTCCTACACCATCTTTGGTGCCTGGAAAGGCCATAACTCCACACTTTGCTATTTCTAGTGAATCAGCATATCGTTCTGGAATAGCTGATGACAGATCTGCTGAAAATGATGAGAGACTTATTTACGAGGCAGCATTACTGGATATCAGTCAACCTAAAACAGAGTATGACTTACCTGCTGGTGTATTGTCTGTATCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTCGGAAAGACAATATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGAAGACAATGGTGGTATGGATGTGGAAAAGCATAAAAATAGTGTGGAATCTGATAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGGTGAAAAGCTTGATGTTTTAGTTTATCATGGGGGCAGTAGGACAAAGGATCATATTGCACTTGCAAAATACGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTCCCTAAGCAACCGTTAGTTGAGGAGGATGATATCGAGGACAAAAATGGGGAAAGATTTGGGTTGTCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAACCATTTAATGGAAATAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACATTGAATGTGGTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCCCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACGCCTATTCAAAACAGTATTGATGATTTGTATAGCTACTTTAGATTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCCATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTTAGCAAAGTGGATTTCTCAAAGGAGGAGCGAGCCTTCTATACCAAGTTGGAATCAGACTCACGCTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTGATGCTCTTACGTCTTCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAAAGGCAAAAATTCTTCCAAGGGAAATGCAGATTAATCTATTTAATTGTTTGGACTCAACCTATGCTATCTGTCACATTTGCAATGATCCCCCTGATGACCCTGTTATTGCAATGTGTAGCCATGTCTTCTGTCATCAATGTGTACAGGAATATTTGCTTGGTGATGATAATACGTGCCCTGCAGTGAAATGTAAAGGCACAATCGGTTGTGATCTTATTTTCTCCAAAGTTACTCTGAGGAGTTGTATCTCTGATGATGGTGGCACTTCTAGTTCTTCAAATTCACTTCTTTGTGATTATTCGCCAGTGCAGCAGGATGATTATGTTTCATCTAAAGTCCAAGCTGTTCTTGAGGTTTTGAAGTCAAAATGTTATGTGAAGATATCTAATTCTGACTTAGCAAACTCTGGATGTTTTAGAGATTCACCGTCTTCTGATAATTTAGATGTTGATGACTGTGATTCAGATGTTAGGATTACAAAACACACAAGAAAGTATTCTGACTCCACAACTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGAAATCATTGGGTCAAGTTGGTATACTGTACAGGAGACTCGATGGTAGGATGACTCTAGGTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAAATACCGTTGAAGATCGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCCGGAGCTCGCCTTACAGTGGATGATCTGAAATATCTGTTCATGGTCTAG 3042 0.4047 MDSCIYISSSDDDLEEIDVRKRTLPQWATPTERSSDYGRRDNSSRGANSSSLSSSNVYNHSQIKPHTQPVSSTNAPNHRNARSDEPSYHAQNGNTSQQQTVNSRISNSHSADYEKMSSQQTFKKTLPSSLPPSATRVLPSSLFASDIRLSKLKDNTGNSHLHDAYKNRRQGVGPSTSGDRGYIRDSFSRGFDGDHLFYQNGGNRIPTPSLVPGKAITPHFAISSESAYRSGIADDRSAENDERLIYEAALLDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILALRSLQSKSKTDDTCNHKTEALNLDDDEDNGGMDVEKHKNSVESDREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGGEKLDVLVYHGGSRTKDHIALAKYDVVLTTYSIVTNEVPKQPLVEEDDIEDKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGRKGIDIECGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSKEERAFYTKLESDSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEKAKILPREMQINLFNCLDSTYAICHICNDPPDDPVIAMCSHVFCHQCVQEYLLGDDNTCPAVKCKGTIGCDLIFSKVTLRSCISDDGGTSSSSNSLLCDYSPVQQDDYVSSKVQAVLEVLKSKCYVKISNSDLANSGCFRDSPSSDNLDVDDCDSDVRITKHTRKYSDSTTEGPIKAIVFSQWTSMLDLVEKSLGQVGILYRRLDGRMTLGARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQDEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00206 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 758 IPR013083 -
Phac7g00206 1013 Gene3D - 362 448 IPR038718 -
Phac7g00206 1013 SUPERFAMILY RING/U-box 705 765 - -
Phac7g00206 1013 Gene3D - 607 1011 IPR027417 -
Phac7g00206 1013 Pfam Helicase conserved C-terminal domain 859 955 IPR001650 -
Phac7g00206 1013 CDD SF2_C_SNF 856 964 - -
Phac7g00206 1013 MobiDBLite consensus disorder prediction 154 184 - -
Phac7g00206 1013 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 554 IPR014001 -
Phac7g00206 1013 SMART helicmild6 872 955 IPR001650 -
Phac7g00206 1013 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 475 604 - -
Phac7g00206 1013 MobiDBLite consensus disorder prediction 324 376 - -
Phac7g00206 1013 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 53 1012 - -
Phac7g00206 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 1012 IPR027417 -
Phac7g00206 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 592 IPR027417 -
Phac7g00206 1013 CDD DEXDc_SHPRH-like 271 592 - -
Phac7g00206 1013 Pfam Zinc finger, C3HC4 type (RING finger) 708 744 IPR018957 GO:0046872
Phac7g00206 1013 Gene3D - 481 605 IPR038718 -
Phac7g00206 1013 SMART ring_2 708 746 IPR001841 -
Phac7g00206 1013 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 842 1008 IPR001650 -
Phac7g00206 1013 Pfam SNF2-related domain 274 670 IPR000330 GO:0005524|GO:0140658
Phac7g00206 1013 MobiDBLite consensus disorder prediction 1 135 - -
Phac7g00206 1013 Gene3D - 246 336 IPR038718 -
Phac7g00206 1013 SMART ultradead3 267 571 IPR014001 -
Phac7g00206 1013 MobiDBLite consensus disorder prediction 41 135 - -
Phac7g00206 1013 ProSiteProfiles Zinc finger RING-type profile. 708 747 IPR001841 -
Phac7g00206 1013 ProSitePatterns Zinc finger RING-type signature. 723 732 IPR017907 -
Phac7g00206 1013 MobiDBLite consensus disorder prediction 324 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00206 Phac-Chr7 979239 991823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00206 1 913 RAD5 or RAD16-like Gene Family AT1G50410 54.158 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac7g00206 SNF2_N 4.9e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00206 - - gmx:100795142 1632.08