Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00203 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCCGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGTGCTAAAGATGGCAGTGCTTTTGCGCGATGCGACGATTGCAAGAAGAATGTGCCGGTTGTACTCATCGACATGCACAATTGCAGCCTTGAGGCGAAAATTAAAATGAACCTTGATGCGCAGGTTGTGGATCAGGCTGCTGAAGCTAAGAAGATAGAGAGGAAGAAACCCAAATCTAAAGAGCCGAAGGCGAAAAAGGCTAAGACAGAGAAGGGGAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTGCCACGGCCTTCTTTGTCTTCTTGGATGATTTTAGGAAAACGTTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGCAAGGAGGCTGGTGAGAAGTGGAAATCTATGACTGACGAAGAGAAGAAACCTTATTTGGATAAAGTTGCTGAACTCAAGGCAGAATATGAGAAGGCCATGGAAAGCTATAGGGCCGGTGAAGTCGAAGAAGATCGAGCTGGATCTGATAAGGAAACTGCAGCAAAAGAAGTGGAAGAGGAGTTAACGGATGAAGAGTAG 600 0.4617 MASQTRKRVDAVDSRSASVLVRAKDGSAFARCDDCKKNVPVVLIDMHNCSLEAKIKMNLDAQVVDQAAEAKKIERKKPKSKEPKAKKAKTEKGKKVKDPNKPKRPATAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYRAGEVEEDRAGSDKETAAKEVEEELTDEE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00203 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Phac7g00203 199 Gene3D High mobility group box domain 97 173 IPR036910 -
Phac7g00203 199 MobiDBLite consensus disorder prediction 84 102 - -
Phac7g00203 199 SUPERFAMILY HMG-box 93 178 IPR036910 -
Phac7g00203 199 Coils Coil 156 176 - -
Phac7g00203 199 SMART hmgende2 101 172 IPR009071 -
Phac7g00203 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Phac7g00203 199 Coils Coil 56 76 - -
Phac7g00203 199 FunFam high mobility group B protein 7 isoform X1 97 173 - -
Phac7g00203 199 MobiDBLite consensus disorder prediction 169 191 - -
Phac7g00203 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Phac7g00203 199 MobiDBLite consensus disorder prediction 67 103 - -
Phac7g00203 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 194 - -
Phac7g00203 199 MobiDBLite consensus disorder prediction 169 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00203 Phac-Chr7 969340 973718 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phac7g00203 HMG_box 3.8e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00203 K25507 - gmx:100810345 288.115