Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00178 ATGGTTCTATCAAACAGGAAACTGAAGCTTAAGCTCAGAGCTAAATTGCTCCAACAACAAAATCATACCCACCAAGTTCCTTCATCTTCCAACTCTCTCAAAACCCTTTTGGACGCTGCCACCCACACACCCAGACTGTCCAAGCGAGACAAACTCCGAAAGCTTCGATCTTCCCAAAACCCTCCAAAGGAACCCAACAAGGAAACTGAAACTGAAACAAAGGGTTCCGCCAATAAGAAAAGCAAGAAGAGAAAGAGGAAGGTAGAGGACGATGACGTGGCAAATGGGGTTCCCGACACCACACCACAGAACAACAGCACGAAGAAAAAGAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAGAAAAAACCCAAAACCGCGGAAGAGAATGGTTCTAATGGTGCAGGGGAAACGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGTTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGAATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAAAGCGAGCCAACAAAGCACCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGATTATATGTTGGGAATTTGAAATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAGTAATTGTGAGATAACGTCCATACGATTTGGTATGGATAAGGAGACAGGACAGTTTCGAGGGTATGCTCATGTGGATTTCAGTGATAGTCAGTCACTGAAAAGAGCACTTACATTGGACCAAAATGATTTGTCTGAGAGACCTGTCAGGATAAGTTGTGCAGTTCCTCTGAAGAAAAAACCAGGAACTCATAAAAGCTCCCCAGTTGATGGAGCTGATAATGGTGATAAATCAACTTCCTTAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGGAGGAAGTGCTATGAATGTGGTGAGAAGGGTCATGGTTTTTCGGCATGCCCTAAGAAACAAACAGGTGCTGCAACTACAACCTAA 1221 0.4259 MVLSNRKLKLKLRAKLLQQQNHTHQVPSSSNSLKTLLDAATHTPRLSKRDKLRKLRSSQNPPKEPNKETETETKGSANKKSKKRKRKVEDDDVANGVPDTTPQNNSTKKKKKKKKLKKNKKKKPKTAEENGSNGAGETPEATELTKTNTTTSQDNVDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKTKRANKAPDFAPEILEGYNRLYVGNLKWDITEEELRKFFSNCEITSIRFGMDKETGQFRGYAHVDFSDSQSLKRALTLDQNDLSERPVRISCAVPLKKKPGTHKSSPVDGADNGDKSTSLGSGKMNGADGDKSSSTVSGKMKRRKCYECGEKGHGFSACPKKQTGAATTT* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00178 406 ProSiteProfiles Zinc finger CCHC-type profile. 380 397 IPR001878 GO:0003676|GO:0008270
Phac7g00178 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Phac7g00178 406 SUPERFAMILY RNA-binding domain, RBD 155 240 IPR035979 GO:0003676
Phac7g00178 406 MobiDBLite consensus disorder prediction 131 153 - -
Phac7g00178 406 MobiDBLite consensus disorder prediction 107 122 - -
Phac7g00178 406 MobiDBLite consensus disorder prediction 41 153 - -
Phac7g00178 406 SUPERFAMILY Retrovirus zinc finger-like domains 374 401 IPR036875 GO:0003676|GO:0008270
Phac7g00178 406 Gene3D - 357 406 - -
Phac7g00178 406 SMART rrm1_1 256 327 IPR000504 GO:0003723
Phac7g00178 406 SMART rrm1_1 161 233 IPR000504 GO:0003723
Phac7g00178 406 Gene3D - 251 338 IPR012677 -
Phac7g00178 406 MobiDBLite consensus disorder prediction 330 406 - -
Phac7g00178 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 331 IPR000504 GO:0003723
Phac7g00178 406 SUPERFAMILY RNA-binding domain, RBD 248 339 IPR035979 GO:0003676
Phac7g00178 406 Gene3D - 96 245 IPR012677 -
Phac7g00178 406 CDD RRM1_PHIP1 162 233 IPR034361 -
Phac7g00178 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 63 238 - -
Phac7g00178 406 MobiDBLite consensus disorder prediction 53 77 - -
Phac7g00178 406 MobiDBLite consensus disorder prediction 347 371 - -
Phac7g00178 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 323 IPR000504 GO:0003723
Phac7g00178 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 228 IPR000504 GO:0003723
Phac7g00178 406 MobiDBLite consensus disorder prediction 372 387 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00178 160 329 Eukaryotic Initiation Factors Gene Family AT2G36660 27.072 9.41e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00178 - - gmx:100814693 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g00178 7 857364 860135 Phac7g00178 7 857364 860135 ECH