Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00159 ATGGCGGGGATTCAGATGCTACCGTACGGCGACGTCGATTCCAATTTGAGGGCCATGGCCGGCCGCGCCGAGGGTTTCGGCCGCCACGCCATCGGCGGCCTCAACGGTTCTCTGTATCTCGTCACCACTCTCGCAGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGTAGAATCGAACCTTTGTGGATTGTTTTTGAGGTTTCTGGTACGATTCAGCTGTCGTCGTACCTGAGTGTGTCGTCGTATAAGACAATAGATGGGAGAGGGCAGAGGGTGAAATTGACTGGGAAAGGTTTGAGGCTGAAGGAATGTGAGCACATCATCGTGTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATCAAACCAAATTCTAGGCATATATGGATCGATCGTTGCACCCTTCGTGATTACGACGATGGCCTTATAGACATCACGAGACAAAGCACCGATATCACTGTATCTAGGTGTTGCTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCACTGTTTCTTTGATGGAACACGGCAAAGACAACCACGTGTGAGATTTGGAAAAGTTCATCTATACAACAATTACACCAGAAACTGGACGGTATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATACTCTCAATGTAACATATATGAAGCGGGAACTAAGAAAAAGACTTTTGAATTTTATACAGAGAAGGCGGCAGATAAGGAAGAGCAAAAGTCAGGCTCCATAGTATCAGAAGGAGACATATTTTTGAATGGTGCTCAGCCATGCTTGGTTACACAAAACAGAGAAGTGGCCATGTTCCATCCTAGCGAATATTACTCGACATGGACAATGGAAGCAGCTGCGCATTCTCTCAGAGAGGTCCTCCAATTGTGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGATCGTATGGTCCTTAATTAG 1005 0.4756 MAGIQMLPYGDVDSNLRAMAGRAEGFGRHAIGGLNGSLYLVTTLADDGPGSLREGCRRIEPLWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSRCCFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWTVYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGSIVSEGDIFLNGAQPCLVTQNREVAMFHPSEYYSTWTMEAAAHSLREVLQLCTGWQSICRPVDRMVLN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00159 334 Pfam Pectate lyase 77 240 IPR002022 -
Phac7g00159 334 Gene3D - 9 316 IPR012334 -
Phac7g00159 334 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Phac7g00159 334 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Phac7g00159 334 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Phac7g00159 334 SUPERFAMILY Pectin lyase-like 20 323 IPR011050 -
Phac7g00159 334 PANTHER PECTATE LYASE 18-RELATED 11 289 IPR045032 GO:0030570
Phac7g00159 334 SMART amb_all 49 247 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00159 Phac-Chr7 767546 770867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00159 44 332 Polysaccharide Lyase AT3G55140 79.239 1.00e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00159 K01728 - gmx:100802068 635.95