Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00110 ATGGCAGCATCTTCAGCAGAATGTGCAGTGATTGGAGTGATTGATGGGAAGTTTGAAAGTGGATACATAGGTACAGTGAGAATGGGATCAGAGACACTGAAAGGAATAGTTTATGAAGTGGCACAGCAGCATCAAAGTGTTCATCATCCACCACAGAGGAAGAGATCAGAGATGAAAAAGAGAGTTCCTGTTCATCCAAAACATAGCAGAAGTGGCTACAATTTCTTCTTTGCTGAACAACATGCAACACTCAAAACACTTCACCAAGGAAAAGAGGGAGAGATTCCTAGGATCATTGGTCAACTTTGGTCAAAGTTAAAAGTATCCCAAAAGATGATTTATCAAGAGATGGCAATGAAAGATAAAGAAAGGTACATGGTAGAAATGGAGGATTATGTGGAGAAACTGAAAATGGGTCAAAATATCACTGATGCTGTGCCACTTCGACAATGGCCTCCCAAACCAGACACAGAGATGTTGGATGTTGAAAGTGAAGAAGAAGGGTTTGAAGATAGAGGTTTTGATGATGTGAAAGCAATGCCTCATGCAGTAATGGAGATTGAAGGAAACTGTTTGGGTTCAAAAGAGAACTCACCCAATTAG 603 0.4046 MAASSAECAVIGVIDGKFESGYIGTVRMGSETLKGIVYEVAQQHQSVHHPPQRKRSEMKKRVPVHPKHSRSGYNFFFAEQHATLKTLHQGKEGEIPRIIGQLWSKLKVSQKMIYQEMAMKDKERYMVEMEDYVEKLKMGQNITDAVPLRQWPPKPDTEMLDVESEEEGFEDRGFDDVKAMPHAVMEIEGNCLGSKENSPN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00110 200 CDD HMG-box_AtHMGB9-like 66 132 - -
Phac7g00110 200 Gene3D High mobility group box domain 51 145 IPR036910 -
Phac7g00110 200 MobiDBLite consensus disorder prediction 44 67 - -
Phac7g00110 200 Pfam HMG (high mobility group) box 66 132 IPR009071 -
Phac7g00110 200 MobiDBLite consensus disorder prediction 53 67 - -
Phac7g00110 200 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 162 - -
Phac7g00110 200 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 66 133 IPR009071 -
Phac7g00110 200 SMART hmgende2 65 134 IPR009071 -
Phac7g00110 200 SUPERFAMILY HMG-box 53 137 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00110 Phac-Chr7 558373 560024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00110 1 163 ARID Transcription Factor Family AT1G04880 44.792 1.29e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phac7g00110 HMG_box 3.5e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00110 - - vra:106770743 263.848