Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00108 ATGGCATCAACTTCTGGCGTTGGTAGCAGCTCAATACCCATCAAAGATGTAGCCACGAGCTTTCGTGCATATCCTCTTCCTCTAGCAAGATATGAGGAGATTGTAGAAAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAGTACATGATTCCTATTGTTGGTGGAAGAGAACTAGATTTGCATCGTCTCTTCATTGAAGTGACTACCCGAGGAGGCATTGCTAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCTTCAACAGCTACGAATGCTTCTTTTGTGTTGAGGAAGTACTATGCTTCACTGCTCTACCATTATGAACAAATCTACTTTTTTAAAGCCCGGGAATGGGACCCTACTGCTCCTGATGCTTTGCAGAACCAATCAACCCTGGTAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGTCAGAAATTCAACCCGGTGTTTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAACCTCTTCAGCTGGGCCTCCAGTCATTGGGGTCATTGACGGGAAATTTGAAAGTGGTTATCTAGTTACTGTCACGATTGGCTCAGAGAAACTCAAGGGAGTACTTTATCAAGCTCCCCAGAATCCTGTTTTGCACGCATCCGATCATAATAACAGCGCTTCTGCTTCGGCGGGTGTCCATCGACGGCGACGCAGGAAGAAATCAGAGATAAAAAGAAGAGATCCTGCTCATCCAAAACCAAATAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGGCACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAGGAGAAGGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAAACTGAAGATGGGTCAAGTTATCAGTGATGCTGTGCCCCTTCAACAACGACTCCCTGATGGAGATGCTGACATGTTGGATGTTGACTTGAAAACGGATGAAGCTGAGGCAGATTCCCTTCAAACTCCAGAGGAGAGTAGTTCTGGTGGAAGTGACTATGAAGATTATAATAAAACTGCAGAAAGAGGTTTTGATATGGATGCATTACCTGTATTAGGAATGGATGCAGAAACAAGCTATCTGGGTTCAGAAGAGAAGTCATCCAAAGGGGGTTTATGA 1263 0.4307 MASTSGVGSSSIPIKDVATSFRAYPLPLARYEEIVENSQLFMFTLEKLHASMGTKYMIPIVGGRELDLHRLFIEVTTRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKAREWDPTAPDALQNQSTLVVPPPKIQFPQSLSEIQPGVFQQSNVNAAKLPEAMATSSAGPPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLHASDHNNSASASAGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPDGDADMLDVDLKTDEAEADSLQTPEESSSGGSDYEDYNKTAERGFDMDALPVLGMDAETSYLGSEEKSSKGGL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00108 420 SMART ARID_2 32 122 - -
Phac7g00108 420 Gene3D - 27 138 IPR036431 GO:0003677
Phac7g00108 420 SMART bright_3 36 127 IPR001606 GO:0003677
Phac7g00108 420 CDD HMG-box_AtHMGB9-like 260 326 - -
Phac7g00108 420 MobiDBLite consensus disorder prediction 225 239 - -
Phac7g00108 420 SUPERFAMILY HMG-box 248 331 IPR036910 -
Phac7g00108 420 Gene3D High mobility group box domain 244 338 IPR036910 -
Phac7g00108 420 SMART hmgende2 259 328 IPR009071 -
Phac7g00108 420 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Phac7g00108 420 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Phac7g00108 420 SUPERFAMILY ARID-like 34 135 IPR036431 GO:0003677
Phac7g00108 420 MobiDBLite consensus disorder prediction 240 254 - -
Phac7g00108 420 FunFam High mobility group B protein 15 29 143 - -
Phac7g00108 420 PRINTS High mobility group (HMG1/HMG2) protein signature 292 311 - -
Phac7g00108 420 PRINTS High mobility group (HMG1/HMG2) protein signature 311 331 - -
Phac7g00108 420 FunFam High mobility group B protein 15 242 337 - -
Phac7g00108 420 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Phac7g00108 420 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 260 327 IPR009071 -
Phac7g00108 420 MobiDBLite consensus disorder prediction 225 267 - -
Phac7g00108 420 Coils Coil 309 329 - -
Phac7g00108 420 MobiDBLite consensus disorder prediction 360 397 - -
Phac7g00108 420 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 17 374 - -
Phac7g00108 420 Pfam HMG (high mobility group) box 260 327 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00108 Phac-Chr7 551169 556081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00108 1 358 ARID Transcription Factor Family AT1G04880 59.200 1.70e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac7g00108 ARID 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00108 - - gmx:100783284 728.398