Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g00038 ATGAACAGAAACAAGGAAAGTTATTCAGATTGTTGTGGGGAAATCAATTCTGCAGCATTTGATGCCATGCAAGAAGAAAACAGATCAGCAGGGTCGTTGTTTCAGAAGTTCAAAGGCGTTGTGCCTCAGCAAAACGGGAACTGGGGTGCACAGATATATGCAAACCACCACAGAATCTGGTTGGGGACTTTCAAATCCGAAAGAGAAGCTGCAATGGCGTATGACAGCGCCAGCATAAAGCTCAGAAGCGGAGAGAGCCACAGAAACTTCCCATGGGACGATCAAACGGTGCAAGAGCCTGAGTTTCAGAGCCATTACAGCACAGAAGCAATGCTGAGCATGATCAGAGATGGCACCTACGCATCACACTTTGCCACGTTTCTCACCACTCGTCAAACCCAACAAGGTGTTGTTGCAAAGCACGTAACTTTGAAGGGTGATGCGGAGAAGCTCTGCTGCACCCTGCTTTTTCAGAAGGAGCTGACACCAAGTGATGTGGGGAAGCTCAACAGGCTTGTGATCCCGAAAAAGCATGCAGTGAGCTATTTTCCTCAGGTGTGTGAGATTGCAGAAGGGCATGAAGAACATGGAAGTGTTGACGTTGAGGTTGCGTTTTATGACAGGTTGATGAGACTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATGGGAGAAAAGGTAGTGGAGAGGGAGAAGCTTTTGGATTGATTGATGTAATTTATAACTCAGATGATGAGAAAGTGAGGAAGAAGAAGACAACAAAGAAGAAAACATTGGAAATGATTTGA 888 0.4538 MNRNKESYSDCCGEINSAAFDAMQEENRSAGSLFQKFKGVVPQQNGNWGAQIYANHHRIWLGTFKSEREAAMAYDSASIKLRSGESHRNFPWDDQTVQEPEFQSHYSTEAMLSMIRDGTYASHFATFLTTRQTQQGVVAKHVTLKGDAEKLCCTLLFQKELTPSDVGKLNRLVIPKKHAVSYFPQVCEIAEGHEEHGSVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDGRKGSGEGEAFGLIDVIYNSDDEKVRKKKTTKKKTLEMI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g00038 295 Pfam B3 DNA binding domain 157 250 IPR003340 GO:0003677
Phac7g00038 295 CDD B3_DNA 156 251 IPR003340 GO:0003677
Phac7g00038 295 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Phac7g00038 295 Gene3D - 154 263 IPR015300 -
Phac7g00038 295 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Phac7g00038 295 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
Phac7g00038 295 ProSiteProfiles B3 DNA-binding domain profile. 157 276 IPR003340 GO:0003677
Phac7g00038 295 SUPERFAMILY DNA-binding domain 36 92 IPR016177 GO:0003677
Phac7g00038 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 252 IPR044800 GO:0003700
Phac7g00038 295 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Phac7g00038 295 SMART B3_2 157 260 IPR003340 GO:0003677
Phac7g00038 295 SUPERFAMILY DNA-binding pseudobarrel domain 155 252 IPR015300 -
Phac7g00038 295 FunFam AP2 domain-containing protein RAP2.8 35 92 - -
Phac7g00038 295 Pfam AP2 domain 36 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g00038 Phac-Chr7 315461 316379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g00038 36 272 RAV Transcription Factor Family AT1G51120 59.600 4.79e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac7g00038 B3 3.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g00038 K09287 - gmx:102660503 393.275