Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g03207 ATGGAACAGCTCGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATTTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCATTTTGCAAGACACTCACAGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCGCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTGCTGGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTATAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGAGATCATTAAAGGTTCAATGGGATGAACCATCTTCTATTTTACGTCCTGATAGAGTTTCTCCATGGGAGTTGGAGCCACTTGTGTCTACCCCTCCCACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCACGGCCTCATGTTCTTCCTTCAACAATGCCTGATTCTTCTATGCAAGGTGTACGGAAATCATCAGTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGGCAAGACATCTATCCACCGGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAATTGTTCTGCTTCCAACAAATCAATATTTTGGTCTAGTAGGACGGAAAACTCTACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGGGCTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGATAATTGCAATGGGGAAGAAAATCTACCAATGGTCAATTTGTCAGGAAGGGTGGGTGATGATGGCCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATATTAATCGATATGATATTCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCTTGCGGTCTCCCCAGGAGTCTCAAAGTAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCTGTGGATTTAACTCGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTCTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGACATGATGATGGTTGGGGATGATCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCTGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAATGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGATGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1869 0.4329 MEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPHVLPSTMPDSSMQGVRKSSVDSAPFSYRDHQHGQDIYPPAKFNSTATGFLGFGGNCSASNKSIFWSSRTENSTESFSPVALKESGEKRQGAANGCRLFGIQLLDNCNGEENLPMVNLSGRVGDDGPLPSLDAESDQHSEPSNINRYDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPINEEVKPSKMDSEAVVNPDDQSSIVGSGC* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g03207 622 SMART B3_2 76 178 IPR003340 GO:0003677
Phac6g03207 622 Pfam Auxin response factor 202 284 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac6g03207 622 MobiDBLite consensus disorder prediction 608 622 - -
Phac6g03207 622 FunFam Auxin response factor 493 587 - -
Phac6g03207 622 SUPERFAMILY CAD & PB1 domains 500 575 - -
Phac6g03207 622 SUPERFAMILY DNA-binding pseudobarrel domain 65 205 IPR015300 -
Phac6g03207 622 CDD B3_DNA 74 176 IPR003340 GO:0003677
Phac6g03207 622 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Phac6g03207 622 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Phac6g03207 622 FunFam Auxin response factor 74 178 - -
Phac6g03207 622 ProSiteProfiles PB1 domain profile. 498 591 IPR000270 GO:0005515
Phac6g03207 622 MobiDBLite consensus disorder prediction 444 472 - -
Phac6g03207 622 Pfam AUX/IAA family 495 588 IPR033389 -
Phac6g03207 622 Gene3D - 239 311 - -
Phac6g03207 622 FunFam Auxin response factor 239 311 - -
Phac6g03207 622 MobiDBLite consensus disorder prediction 305 353 - -
Phac6g03207 622 Gene3D - 493 587 - -
Phac6g03207 622 Gene3D - 73 178 IPR015300 -
Phac6g03207 622 MobiDBLite consensus disorder prediction 601 622 - -
Phac6g03207 622 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 587 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac6g03207 622 MobiDBLite consensus disorder prediction 307 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g03207 Phac-Chr6 27047175 27053179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g03207 1 616 B3 DNA Binding Superfamily AT1G59750 71.589 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac6g03207 AUX_IAA 1.3e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g03207 K14486 - gmx:100793224 1187.94