Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g03203 ATGGAAGAGGGGAAGAGTATGGGTCGAAAGGAGAAGAGGAAGGCAATGAAGAAAATGAAGCGGAAGCAGACAAGGAAGGAGGCGGCGGAGAGGGAGCGGCGGGAGGAAGAGGACCGCCTCAACGATCCGGAGGAGCAGAGGCGGATTCAGCTGCTGGAGCAGGAGGAGGCAGAGAGAATGCAGAGGGACACCATCCTCTTCCAGGAGAGGGAGAAGGCTTTCATGGATATCATAATCACTCGACAGCAGCAGGAGCAGCAGCAGCAGAAAGAGCGAGAGGAAGAGCAAGAGCAAGAGCAAGAGCAGAGCATTGACCACGACCATGAATTTGAATACGAAGATGGCCCTCCAGAGATTATTTGGCAAGGAAACCAGATCATCTTCAAGAAGAAACAACTCAGAGTGAGGGTTACGGACACGCACCATGACCACAATAGACCTACATCCAATCCCTTACCTCCGGAATCATCCGTATCGGAATCGGAATCGGAATCGCGCACTCAGACCCTTCAGGATGTTGCTCAGCAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACTGGAGCATGTCGTTTTGGTATGCGGTGTAGCAGAGTCCATTTTTACCCTGATAAATCATCCACTATTCTTATCAAAAACATGTACAACGGACCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGATTCAGTGCAAGATTCATTTTGCTGGAGGCTAA 750 0.5013 MEEGKSMGRKEKRKAMKKMKRKQTRKEAAERERREEEDRLNDPEEQRRIQLLEQEEAERMQRDTILFQEREKAFMDIIITRQQQEQQQQKEREEEQEQEQEQSIDHDHEFEYEDGPPEIIWQGNQIIFKKKQLRVRVTDTHHDHNRPTSNPLPPESSVSESESESRTQTLQDVAQQIPNFGTEQDKAHCPFHLKTGACRFGMRCSRVHFYPDKSSTILIKNMYNGPGLACDRDQDEGLEIQCKIHFAGG* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g03203 249 MobiDBLite consensus disorder prediction 86 115 - -
Phac6g03203 249 MobiDBLite consensus disorder prediction 138 168 - -
Phac6g03203 249 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 169 241 IPR009145 GO:0000398|GO:0003723|GO:0089701
Phac6g03203 249 Coils Coil 79 103 - -
Phac6g03203 249 MobiDBLite consensus disorder prediction 82 115 - -
Phac6g03203 249 Coils Coil 12 46 - -
Phac6g03203 249 MobiDBLite consensus disorder prediction 1 61 - -
Phac6g03203 249 MobiDBLite consensus disorder prediction 149 168 - -
Phac6g03203 249 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Phac6g03203 249 PRINTS U2 auxiliary factor small subunit signature 208 228 IPR009145 GO:0000398|GO:0003723|GO:0089701
Phac6g03203 249 PRINTS U2 auxiliary factor small subunit signature 189 208 IPR009145 GO:0000398|GO:0003723|GO:0089701
Phac6g03203 249 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 208 IPR000571 GO:0046872
Phac6g03203 249 MobiDBLite consensus disorder prediction 23 61 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac6g03203 zf-CCCH 0.00011 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g03203 K24273 - vum:124843542 309.301