Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac6g03197 | ATGGGAAGGAAAAAGGCAGAGGATGCTGGGCCATCTGCGAAGACCAAGGCAAGTAAAGATGCTCCCAAGAAGGAAAAATTTTCTGTCTCTGCTATGCTGGCCAGCATGGATGAAAAGCCTGATAAACCCAAAAAAGTCTCTTCTACCTCTAGTAAGCCAAAGCCAAAGTCTGCTCCAAAAGCTTCTGCGTACACTGATGGTATTGATCTTCCTCCGTCTGATGATGAAGATGATGATCTCCTAGAACAGGAGGAGCAAAATTCCAAACGGGGAAGTCAGCAGCAAAAGCCCGATTTGAAGCCTCTTGATGTGCCTATTGCTGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATATTTTAGCAGCCCATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAAGGATGATCATGATGCATTCACTGTGGTGATTGGAAGCCGAGCTTCGGTGCTTGATGGAGATGATGATGCTGATGCTAATGTGAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGTGGTAAAGAACTTCTAAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGCAAGTCCACACTGCTGAAACTTCTTGCCTGGAGGAAGATACCAGTACCCAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTGGTTGGTGATGACAAGACAGCTCTTGAAGCTGTTGTTTCAGCTAATGAAGAACTAGTTAAAATTCGACAAGAGGTTGCCTCTCTTCAGAATGCAGTTTCTGCTGAAGAAAGTGTAGACAAAGATGATGATGAAGATGATACGGGAGAAAAGCTAGCAGAGCTATATGAAAAACTGCAGTTGATGGGATCTGATGCTGCCGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACGAAGAATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGGGCCCTTTTTGTTCAACCAACTCTACTATTGCTTGACGAACCCACAAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATCTGTGCCGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATAGAGATTTTCTCAATACAGTATGTACTGAGATTGTTCATCTCCATGATTTGAAACTTCACTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGCGCTCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAACCAAAGGCAAGGGAAAGGTTGATGAGGATGATGCCCCATCAGAGGTTCCTCAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTCCCTGAACCCACTGAGCTTACACCCCCACTTCTGCAGCTCATTGAAGTCAGCTTTAGCTACCCTAACAGAGAGGATTTCAGGCTATCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCCACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTGCTTCTGAGGGTGAAGTCCGAAGAAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGAAAGTTTGGGCTACCGAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTTGTCTTCACATCTATTTCCATGTCAAAGCCACACATTTTGTTGTTAGATGAACCCACCAACCATCTGGACATGCAAAGTATTGATGCATTGGCAGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTCAGTCATGATTCTAGATTGATATCACGTGTGTGTGATGATGAAGAAAGGAGTCAAATTTGGGTTGTCGAGGATGGTACTGTCAGAACTTTCCCTGGAACATTTGAGGATTACAAGGATGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA | 2169 | 0.4394 | MGRKKAEDAGPSAKTKASKDAPKKEKFSVSAMLASMDEKPDKPKKVSSTSSKPKPKSAPKASAYTDGIDLPPSDDEDDDLLEQEEQNSKRGSQQQKPDLKPLDVPIAEKELKKREKKDILAAHAAEQAKKEALKDDHDAFTVVIGSRASVLDGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVASLQNAVSAEESVDKDDDEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKNMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIVHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKTKGKGKVDEDDAPSEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVASEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVRTFPGTFEDYKDDLLREIKAEVDD* | 723 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac6g03197 | 722 | CDD | ABCF_EF-3 | 164 | 393 | - | - | |
| Phac6g03197 | 722 | Pfam | ABC transporter | 512 | 647 | IPR003439 | GO:0005524 | |
| Phac6g03197 | 722 | MobiDBLite | consensus disorder prediction | 430 | 470 | - | - | |
| Phac6g03197 | 722 | Gene3D | - | 161 | 445 | IPR027417 | - | |
| Phac6g03197 | 722 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 164 | 423 | IPR003439 | GO:0005524 | |
| Phac6g03197 | 722 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 495 | 720 | IPR003439 | GO:0005524 | |
| Phac6g03197 | 722 | Gene3D | - | 460 | 721 | IPR027417 | - | |
| Phac6g03197 | 722 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Phac6g03197 | 722 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 117 | 715 | - | - | |
| Phac6g03197 | 722 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Phac6g03197 | 722 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 474 | 709 | IPR027417 | - | |
| Phac6g03197 | 722 | Coils | Coil | 713 | 722 | - | - | |
| Phac6g03197 | 722 | Coils | Coil | 240 | 260 | - | - | |
| Phac6g03197 | 722 | Pfam | ABC transporter | 179 | 348 | IPR003439 | GO:0005524 | |
| Phac6g03197 | 722 | ProSitePatterns | ABC transporters family signature. | 320 | 334 | IPR017871 | GO:0005524|GO:0016887 | |
| Phac6g03197 | 722 | FunFam | ABC transporter F family member 4 | 162 | 444 | - | - | |
| Phac6g03197 | 722 | FunFam | ABC transporter F family member 4 | 460 | 722 | - | - | |
| Phac6g03197 | 722 | Coils | Coil | 412 | 432 | - | - | |
| Phac6g03197 | 722 | CDD | ABCF_EF-3 | 495 | 697 | - | - | |
| Phac6g03197 | 722 | SMART | AAA_5 | 521 | 697 | IPR003593 | GO:0016887 | |
| Phac6g03197 | 722 | SMART | AAA_5 | 188 | 392 | IPR003593 | GO:0016887 | |
| Phac6g03197 | 722 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 164 | 418 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac6g03197 | Phac-Chr6 | 26999392 | 27002862 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac6g03197 | 495 | 698 | Calmodulin-binding Proteins | AT2G36910 | 28.378 | 7.18e-10 | 60.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac6g03197 | K06184 | - | gmx:100806865 | 1210.28 |