Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g03130 ATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATCGTTGAGAAATACCAGTCAACCTGCACTCCCAAGCCATCAATATCCAAGCTTCCTCCTATAACACCAATTGCAGATAAAGCTGATTTTGCTAGAGAGGGGGATAATGTTTTGCCACCAGACCTGTGTTTAGACTGCATCCATGGGTACAAGTTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTCAATTCTACACAGATATCAAAACTTCGCCATGATAGGTCACAGTTGAATAAGCAAATTCAGCAACTAGAAAAACATATTCAATCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCATCCACATCATATGTGTATGGAACACCTCAGCAAACTGCCCCCTGTAATGGATCCAAGAGATATGATACCCAGGCTTATATGGGTGACGGGACATTTGGTTCATCATTCCAGTCTCTTCCATCTTTTTCTATAGACAAGTATAACACATCATCTGGTCTGGGTCCGGTTGAGCGGGATGCCTTCATCCCAAAGATTATTGAAGTCAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCATGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATCAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCGGCTCTTATTTGTCATGGTATAACATTAGTAATCTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAAATCCTCCGAGAACTTACTTCTGATTACTGTAAATACAAGTTATTATATGTGACGCCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGAGACACTTAGAGAATTTACATTTTCGCGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGTCTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCGTTATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTGGCAATTTACAGGAATGTGGACATAAATGTGCATTTTATCATGGTAGCATGGATCCTTCTCAACGTGCCTTTGTTCAAAATCAGTGGAGCAAAGATGAAATTAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATTAATAAACCTGATGTCCGCTTTGTAATCCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGATAAGTCAAGGAGGAGCAATAGAGCAAAGTCCCATGACATACAACCGTTCAAATATGATAAATCCAGGAAGCATACTAGAAACAAACACTGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGCCGGCGCCTTCTGCAGCTTGTTCATTTTGGAGAGAAGTTCAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACGGAGACAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACTGGACAGAGGTTCTCATCATCTCATATATTAGAAGTTTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAATCGGCATGAGACAGTGAGCCTTCATGCTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTTTTATGGATCGGTATCATCAATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTTCTGGCCACAGAATAATATTGAGATTTCCATCGTCTGTAAAGGCAACAAAACCAGGGAAGTCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGCAAAGCAGAATGTTTTTCCAATTGACACTCCTCAGCCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGACAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTAGATATCAATGGCATTGGCAAGGCAAAGGTAAGCAAGTATGGGGATAAGATACTGAAAACCATTGAGAATACCATAAATGAATATTACAAGTTGGACAAAGGCAGTAGCGGCAGCAAAGGCAGTGCAGATTCTGCCAAAAGGAGACGAGATGGAGATCCAGATGCTGATGCTGATGAAGAAGCCCTCACCAATAGCACAGGTCGTTCTAAAAAAAGAACTATAAAGAGACAAAATAGAAAAGCTGCGATATATGATTCTGCAGAGGAAGATTATTTTCATGGATGCCATGACGAAGACCTAGATTTTGACCTCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATGGTGATGGGAGAGTACTACCTCAATGGACAACATCTTGA 2988 0.3973 MSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKLPPITPIADKADFAREGDNVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNKQIQQLEKHIQSGNLNEERQKSHFSASTAPSTSYVYGTPQQTAPCNGSKRYDTQAYMGDGTFGSSFQSLPSFSIDKYNTSSGLGPVERDAFIPKIIEVNYIEGSGDKRWSSHDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELTSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAGNLQECGHKCAFYHGSMDPSQRAFVQNQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGAIEQSPMTYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTETAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHAAGKHLAKGEASRILHHLVVEDILVEEVKKSDFYGSVSSILKVNELKVCNLFSGHRIILRFPSSVKATKPGKSDATPAKGSLTSAKQNVFPIDTPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQISKRVPRTKEELLDINGIGKAKVSKYGDKILKTIENTINEYYKLDKGSSGSKGSADSAKRRRDGDPDADADEEALTNSTGRSKKRTIKRQNRKAAIYDSAEEDYFHGCHDEDLDFDLIEIDALDQVTCKNGDGRVLPQWTTS* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g03130 995 NCBIfam RecQ family ATP-dependent DNA helicase 242 716 IPR004589 GO:0004386|GO:0006310
Phac6g03130 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 582 IPR027417 -
Phac6g03130 995 FunFam ATP-dependent DNA helicase Q-like 4A 811 897 - -
Phac6g03130 995 MobiDBLite consensus disorder prediction 130 166 - -
Phac6g03130 995 SMART hrdc7 815 897 IPR002121 GO:0003676
Phac6g03130 995 Pfam DEAD/DEAH box helicase 252 420 IPR011545 GO:0003676|GO:0005524
Phac6g03130 995 CDD SF2_C_RecQ 441 573 - -
Phac6g03130 995 FunFam ATP-dependent DNA helicase RecQ 223 440 - -
Phac6g03130 995 Pfam RQC domain 662 775 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g03130 995 SMART RQC_2 665 775 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g03130 995 SMART ultradead3 246 449 IPR014001 -
Phac6g03130 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 706 IPR027417 -
Phac6g03130 995 FunFam ATP-dependent DNA helicase Q-like 4A 663 773 - -
Phac6g03130 995 Gene3D - 441 659 IPR027417 -
Phac6g03130 995 Pfam Helicase conserved C-terminal domain 457 563 IPR001650 -
Phac6g03130 995 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 604 IPR001650 -
Phac6g03130 995 MobiDBLite consensus disorder prediction 908 932 - -
Phac6g03130 995 PANTHER DNA HELICASE RECQ FAMILY MEMBER 221 903 - -
Phac6g03130 995 Pfam RecQ zinc-binding 575 656 IPR032284 -
Phac6g03130 995 Gene3D - 214 440 IPR027417 -
Phac6g03130 995 Gene3D - 663 772 IPR036388 -
Phac6g03130 995 MobiDBLite consensus disorder prediction 898 944 - -
Phac6g03130 995 CDD DEXHc_RecQ 241 440 - -
Phac6g03130 995 SUPERFAMILY HRDC-like 818 891 IPR010997 GO:0000166|GO:0044237
Phac6g03130 995 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 372 381 IPR002464 -
Phac6g03130 995 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 433 IPR014001 -
Phac6g03130 995 SMART helicmild6 483 564 IPR001650 -
Phac6g03130 995 ProSiteProfiles HRDC domain profile. 815 897 IPR002121 GO:0003676
Phac6g03130 995 Coils Coil 106 133 - -
Phac6g03130 995 FunFam Bloom syndrome, RecQ helicase 441 660 - -
Phac6g03130 995 Pfam HRDC domain 819 887 IPR002121 GO:0003676
Phac6g03130 995 Gene3D HRDC domain 814 902 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g03130 Phac-Chr6 26706255 26714051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g03130 472 604 Eukaryotic Initiation Factors Gene Family AT3G19760 23.308 8.14e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g03130 K10901 - gmx:100800006 1688.7