Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g03127 ATGTGTTGTTTGGTTGGTACTCAAATGAGACAAGGTGAAGCCAATTCAGTTCGGGTTGTTAAAGAGAATAACAAGAACTGGTTGCAGCATGCCAATGCCCACGAGAATTTCTCCTCCCAAGAGAAATTTTTGAGCTCTAATTTTCTGCTCTCTGTCCCACCTAAGAAGCCCCGCCACCAAGAACCAAACCCTGGGACTTCCGGGTTTGTATTTCGACAAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGTTCTTTCAAGTCTACAAAATTCTAGTAGGACCTATATACAACCCGGAAAAACTGTCAAGGTTACTCGGCAGATTCATGACAATACGAGAACAACTCCCTTCCATGGAGGCTACGAGAATGACAACCGTACCTGTCCTGATGTCACTGCCGCTCCAGTTGTTAGCAGTCATAGTTCTCGCGGTTTGGATGGTTCAGTGAACAATCATAATAAGTACACAGGCCAAATCAATGAGTCTTCCAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATCGTTGAGAAATACCAGTCAACCTGCACTCCCAAGCCATCAATATCCAAGCTTCCTCCTATAACACCAATTGCAGATAAAGCTGATTTTGCTAGAGAGGGGGATAATGTTTTGCCACCAGACCTGTGTTTAGACTGCATCCATGGGTACAAGTTAGGGCTTTGCCCTGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTCAATTCTACACAGATATCAAAACTTCGCCATGATAGGTCACAGTTGAATAAGCAAATTCAGCAACTAGAAAAACATATTCAATCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCATCCACATCATATGTGTATGGAACACCTCAGCAAACTGCCCCCTGTAATGGATCCAAGAGATATGATACCCAGGCTTATATGGGTGACGGGACATTTGGTTCATCATTCCAGTCTCTTCCATCTTTTTCTATAGACAAGTATAACACATCATCTGGTCTGGGTCCGGTTGAGCGGGATGCCTTCATCCCAAAGATTATTGAAGTCAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCATGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATCAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCGGCTCTTATTTGTCATGGTATAACATTAGTAATCTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTATTGCAGGCAAATATACCAGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAAATCCTCCGAGAACTTACTTCTGATTACTGTAAATACAAGTTATTATATGTGACGCCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGAGACACTTAGAGAATTTACATTTTCGCGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGTCTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCGTTATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAATTCATTAGAGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTCGCTGGCAATTTACAGGAATGTGGACATAAATGTGCATTTTATCATGGTAGCATGGATCCTTCTCAACGTGCCTTTGTTCAAAATCAGTGGAGCAAAGATGAAATTAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATTAATAAACCTGATGTCCGCTTTGTAATCCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGATAAGTCAAGGAGGAGCAATAGAGCAAAGTCCCATGACATACAACCGTTCAAATATGATAAATCCAGGAAGCATACTAGAAACAAACACTGAAAACCTTATGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGCCGGCGCCTTCTGCAGCTTGTTCATTTTGGAGAGAAGTTCAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACGGAGACAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACTGGACAGAGGTTCTCATCATCTCATATATTAGAAGTTTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAATCGGCATGAGACAGTGAGCCTTCATGCTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTTTTATGGATCGGTATCATCAATATTGAAGGTAAATGAGCTCAAGGTCTGTAATCTGTTTTCTGGCCACAGAATAATATTGAGATTTCCATCGTCTGTAAAGGCAACAAAACCAGGGAAGTCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGCAAAGCAGAATGTTTTTCCAATTGACACTCCTCAGCCTCAAACTGAAGTGGATTTGGTATAA 2967 0.4024 MCCLVGTQMRQGEANSVRVVKENNKNWLQHANAHENFSSQEKFLSSNFLLSVPPKKPRHQEPNPGTSGFVFRQSENIQVSQRVQFDKAWDVLSSLQNSSRTYIQPGKTVKVTRQIHDNTRTTPFHGGYENDNRTCPDVTAAPVVSSHSSRGLDGSVNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKLPPITPIADKADFAREGDNVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNKQIQQLEKHIQSGNLNEERQKSHFSASTAPSTSYVYGTPQQTAPCNGSKRYDTQAYMGDGTFGSSFQSLPSFSIDKYNTSSGLGPVERDAFIPKIIEVNYIEGSGDKRWSSHDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELTSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAGNLQECGHKCAFYHGSMDPSQRAFVQNQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGAIEQSPMTYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTETAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHAAGKHLAKGEASRILHHLVVEDILVEEVKKSDFYGSVSSILKVNELKVCNLFSGHRIILRFPSSVKATKPGKSDATPAKGSLTSAKQNVFPIDTPQPQTEVDLV* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g03127 988 Pfam RecQ zinc-binding 747 828 IPR032284 -
Phac6g03127 988 FunFam ATP-dependent DNA helicase RecQ 395 612 - -
Phac6g03127 988 SMART RQC_2 837 947 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g03127 988 Coils Coil 278 305 - -
Phac6g03127 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 878 IPR027417 -
Phac6g03127 988 Gene3D - 386 612 IPR027417 -
Phac6g03127 988 SMART ultradead3 418 621 IPR014001 -
Phac6g03127 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 754 IPR027417 -
Phac6g03127 988 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 544 553 IPR002464 -
Phac6g03127 988 FunFam ATP-dependent DNA helicase Q-like 4A 835 945 - -
Phac6g03127 988 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 630 776 IPR001650 -
Phac6g03127 988 MobiDBLite consensus disorder prediction 961 979 - -
Phac6g03127 988 CDD SF2_C_RecQ 613 745 - -
Phac6g03127 988 FunFam Bloom syndrome, RecQ helicase 613 832 - -
Phac6g03127 988 Gene3D - 835 944 IPR036388 -
Phac6g03127 988 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 430 605 IPR014001 -
Phac6g03127 988 SMART helicmild6 655 736 IPR001650 -
Phac6g03127 988 Pfam Helicase conserved C-terminal domain 629 735 IPR001650 -
Phac6g03127 988 Pfam RQC domain 834 947 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g03127 988 Gene3D - 613 831 IPR027417 -
Phac6g03127 988 Pfam DEAD/DEAH box helicase 424 592 IPR011545 GO:0003676|GO:0005524
Phac6g03127 988 NCBIfam RecQ family ATP-dependent DNA helicase 414 888 IPR004589 GO:0004386|GO:0006310
Phac6g03127 988 MobiDBLite consensus disorder prediction 302 338 - -
Phac6g03127 988 CDD DEXHc_RecQ 413 612 - -
Phac6g03127 988 MobiDBLite consensus disorder prediction 950 988 - -
Phac6g03127 988 PANTHER DNA HELICASE RECQ FAMILY MEMBER 392 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g03127 Phac-Chr6 26706255 26714051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g03127 644 776 Eukaryotic Initiation Factors Gene Family AT3G19760 23.308 8.50e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g03127 K10901 - gmx:100800006 1657.5