Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g03077 ATGTCTCTAACAGGTCGTTCTCGTGTTGTTGTGAATGGAGTTAGAAGAACCAGAACTTTTCACTACTTCTGGTGCCTATACTGCCAAAGAACCGTGAGATTACCCTTTACAAACAGTGATGGTTCTACATGCCCCTATTGCTTCCACCATCTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACCTGCCAAATAACCTGCAACCTTCACCAGCTTCTCAACTTTTGGATAGCTTGGCCCTTGTTCTTGATCCACCTCTAAGGAGGCACAACAACAACCATTTCAACACAACCACACAATGGGAAACAGAGAATGAACATGGTTCAGATCATCATGCTTGGATTACACTCCGCTTTCCAAGGCCAACTCGTGCAGATAGGCCTATTTCTCCAGATGATGACTTCATTGATGGGGTGATTCAGAACAATAATAGAACAGGGCCACCTCCAGCAGCATCTTCTGCCATTTCTGCATTGCCAGTGGTGAAACTGACACAAGCCCATTTGGCAAGTGACCCCAATTGCCCTGTTTGCAAAGATGAGTTTGAGCTTGAGATGGAAGCCAGAGAGTTGCCATGCAAGCACTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGCCGCTACGAGCTACAAGGTGTGGCTACTCCTAATGCTAATTACAGTTTCCAAAGAGATGAGAATGAGCTGAGTTTTGCGTTTGAGGAGATCTCAAACAGCTTGAGCTGGATTTGGAACCACTTGTTTTCATTCTCGCCTCTCCGTTCAGTCCTAGATTGGACACGCTCCTACTTTGATTTCCATGAAAATCGTCTTCGTGGTCGTGAAGGTAGGTCTTGGTGGCGATCATTGTTCATTATAGAGTGA 900 0.4611 MSLTGRSRVVVNGVRRTRTFHYFWCLYCQRTVRLPFTNSDGSTCPYCFHHLRYELDISRPRLLMNLPNNLQPSPASQLLDSLALVLDPPLRRHNNNHFNTTTQWETENEHGSDHHAWITLRFPRPTRADRPISPDDDFIDGVIQNNNRTGPPPAASSAISALPVVKLTQAHLASDPNCPVCKDEFELEMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQGVATPNANYSFQRDENELSFAFEEISNSLSWIWNHLFSFSPLRSVLDWTRSYFDFHENRLRGREGRSWWRSLFIIE* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g03077 299 Pfam Ring finger domain 177 219 IPR001841 -
Phac6g03077 299 FunFam E3 ubiquitin-protein ligase RING1-like 142 225 - -
Phac6g03077 299 SUPERFAMILY RING/U-box 158 223 - -
Phac6g03077 299 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Phac6g03077 299 CDD RING-H2_RNF126-like 177 219 - -
Phac6g03077 299 SMART ring_2 178 218 IPR001841 -
Phac6g03077 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Phac6g03077 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g03077 Phac-Chr6 26502511 26505530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g03077 1 278 C3H Transcription Factor Family AT1G68180 33.333 5.93e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g03077 K11982 - gmx:100793656 430.639