Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02994 ATGTTCAGAGTAGATTACAACGGAAGAAGTAACTCAGGTGATGAGGGCGGAGAAAGTGGTGACATTGAGGCTAATGGAATACATAGAAGAAATGCTCTTGCAAGAATAAGGGTTAATAGGGAGACCTGGCAAACCATAGAGTTAATTTCTTTTACTCCTGAAACAACACATACTTATAGGCTAGCCATCAAAGCCTTGCCTCCTGCTGTGTGTTTTGGTGAGGACCAAACCAAGAAATCTCAGTCTGATTGTTCTATTTGCTTGGAAAAATTTAAGCATGGAGAGTTCATTCAACCATTTGGAGTGTGTGCACATGAATTTCATTCCTCCTGCCTTAAGTCTTGGTTGCTCAGTCAAAAAATTACATGTCCACTTTGTCGTGTGGAGTTGCTAATTCCTATCACTGAATATAAGAATTTGGACACTCCTGAAGTATCTGTATAA 444 0.3964 MFRVDYNGRSNSGDEGGESGDIEANGIHRRNALARIRVNRETWQTIELISFTPETTHTYRLAIKALPPAVCFGEDQTKKSQSDCSICLEKFKHGEFIQPFGVCAHEFHSSCLKSWLLSQKITCPLCRVELLIPITEYKNLDTPEVSV* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02994 147 SMART ring_2 84 126 IPR001841 -
Phac6g02994 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 131 IPR013083 -
Phac6g02994 147 SUPERFAMILY RING/U-box 71 134 - -
Phac6g02994 147 Pfam Ring finger domain 83 127 IPR001841 -
Phac6g02994 147 CDD RING-H2 84 127 - -
Phac6g02994 147 ProSiteProfiles Zinc finger RING-type profile. 84 127 IPR001841 -
Phac6g02994 147 MobiDBLite consensus disorder prediction 1 23 - -
Phac6g02994 147 PANTHER - 52 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02994 Phac-Chr6 26137046 26137651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02994 63 145 C3H Transcription Factor Family AT3G18930 31.633 3.97e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02994 - K16282 pvu:PHAVU_006G208700g 134.806