LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g02988	ATGGCCTGGGCGAGACAGTTTATTGACTTCATTATCTCAGAGTGGCTTGTCAAAGTGGTTTTACTCTTGCAAAAAGATGTTTCTTTCCATTTGCTTTCCATTTTCAGTAGTTGGCAAGCAGTTAGGGGGAGTATGTATAGCGATGCCCTGAATGCATTGAAGAGCAATTTGCTTGATCCTAACAACGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACTTGCAATAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTTTCACAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAAGTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTGAGCTTGGATCTGTACTTGAACAATTTATCTGGTCCCATACCGACTACGCTGGGAAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGTCAGGAGGCATACCTATGTCTTTGACAAATGTTTCTTCTTTGCAAGTTCTTGATCTCTCGAACAACCATCTCCAGGGGGAAACCCCAGTGAATGGTTCGTTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTGGCTTGATACCTCCAAAAAACGCTCCATCTCCCGTATCTCCAACACCGCCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAAGAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCCGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACAGATAACTTTAGTAACAAACACATTCTGGGTAGGGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGACGGATCTCTCGTAGCAGTGAAAAGACTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACTCCTACTGAACGATTGCTTGTGTATCCTTACATGGCTAATGGAAGTGTAGCTTCATGTTTACGAGAGCGTCAAGAATCTCAACCACCACTTGGCTGGCCAGAACGGAAGCGTATTGCTTTGGGATCTGCAAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTGGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCTCCTGAGTACCTTTCTACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTAGTGGGCAATTACATTGACGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCAAAGATGTCTGAGGTTGTCAGAATGCTAGAAGGTGATGGTTTGGCCGAGAAATGGGAGCAATGGCAGAAAGACGAGACGTTCCGGCAAGACTTCAACAACAACATTCATCACCCCAATGCTAATTGGATAGTAGATTCAACTTCCCACATCCAAGCAGATGAACTGTCAGGTCCTAGATGA	1896	0.4314	MAWARQFIDFIISEWLVKVVLLLQKDVSFHLLSIFSSWQAVRGSMYSDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNNISGKIPEELGNLTNLVSLDLYLNNLSGPIPTTLGNLAKLRFLRLNNNTLSGGIPMSLTNVSSLQVLDLSNNHLQGETPVNGSFSLFTPISYQNNPGLIPPKNAPSPVSPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLVGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR*	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g02988	631	Pfam	Leucine rich repeat N-terminal domain	48	83	IPR013210	-
	Phac6g02988	631	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	430	442	IPR008271	GO:0004672\|GO:0006468
	Phac6g02988	631	FunFam	Somatic embryogenesis receptor-like kinase 1	384	601	-	-
	Phac6g02988	631	SUPERFAMILY	Protein kinase-like (PK-like)	286	582	IPR011009	-
	Phac6g02988	631	Gene3D	Phosphorylase Kinase; domain 1	276	383	-	-
	Phac6g02988	631	Pfam	Protein kinase domain	308	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02988	631	ProSiteProfiles	Protein kinase domain profile.	307	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02988	631	MobiDBLite	consensus disorder prediction	216	240	-	-
	Phac6g02988	631	SUPERFAMILY	L domain-like	48	209	-	-
	Phac6g02988	631	MobiDBLite	consensus disorder prediction	220	234	-	-
	Phac6g02988	631	Gene3D	Transferase(Phosphotransferase) domain 1	384	601	-	-
	Phac6g02988	631	SMART	serkin_6	307	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02988	631	ProSitePatterns	Protein kinases ATP-binding region signature.	313	335	IPR017441	GO:0005524
	Phac6g02988	631	FunFam	Somatic embryogenesis receptor kinase 1	42	228	-	-
	Phac6g02988	631	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	34	592	-	-
	Phac6g02988	631	FunFam	Somatic embryogenesis receptor kinase 1	276	383	-	-
	Phac6g02988	631	CDD	STK_BAK1_like	313	584	-	-
	Phac6g02988	631	Gene3D	Ribonuclease Inhibitor	45	225	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g02988	Phac-Chr6	26090638	26096131	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g02988	29	631	Receptor kinase-like Gene Family	AT4G33430	77.761	0.0	955

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Phac6g02988		Pkinase	3.9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g02988	K13416		-	gmx:100800522	1093.95