LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g02987	ATGGAGAGACTGACTTCATCTTTTATGAGTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGCAATCAGGAAGGCGATGCCCTGAATGCATTGAAGAGCAATTTGCTTGATCCTAACAACGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACTTGCAATAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTTTCACAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAAGTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTGAGCTTGGATCTGTACTTGAACAATTTATCTGGTCCCATACCGACTACGCTGGGAAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGTCAGGAGGCATACCTATGTCTTTGACAAATGTTTCTTCTTTGCAAGTTCTTGATCTCTCGAACAACCATCTCCAGGGGGAAACCCCAGTGAATGGTTCGTTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTGGCTTGATACCTCCAAAAAACGCTCCATCTCCCGTATCTCCAACACCGCCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAAGAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCCGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACAGATAACTTTAGTAACAAACACATTCTGGGTAGGGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGACGGATCTCTCGTAGCAGTGAAAAGACTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACTCCTACTGAACGATTGCTTGTGTATCCTTACATGGCTAATGGAAGTGTAGCTTCATGTTTACGAGAGCGTCAAGAATCTCAACCACCACTTGGCTGGCCAGAACGGAAGCGTATTGCTTTGGGATCTGCAAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTGGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCTCCTGAGTACCTTTCTACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTAGTGGGCAATTACATTGACGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCAAAGATGTCTGAGGTTGTCAGAATGCTAGAAGGTGATGGTTTGGCCGAGAAATGGGAGCAATGGCAGAAAGACGAGACGTTCCGGCAAGACTTCAACAACAACATTCATCACCCCAATGCTAATTGGATAGTAGATTCAACTTCCCACATCCAAGCAGATGAACTGTCAGGTCCTAGATGA	1851	0.4317	MERLTSSFMSSFFVWAILVLDLVLKASGNQEGDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNNISGKIPEELGNLTNLVSLDLYLNNLSGPIPTTLGNLAKLRFLRLNNNTLSGGIPMSLTNVSSLQVLDLSNNHLQGETPVNGSFSLFTPISYQNNPGLIPPKNAPSPVSPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLVGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR*	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g02987	616	CDD	STK_BAK1_like	298	569	-	-
	Phac6g02987	616	FunFam	Somatic embryogenesis receptor kinase 1	261	368	-	-
	Phac6g02987	616	FunFam	Somatic embryogenesis receptor kinase 1	27	213	-	-
	Phac6g02987	616	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Phac6g02987	616	Pfam	Protein kinase domain	293	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02987	616	MobiDBLite	consensus disorder prediction	201	225	-	-
	Phac6g02987	616	FunFam	Somatic embryogenesis receptor-like kinase 1	369	586	-	-
	Phac6g02987	616	ProSitePatterns	Protein kinases ATP-binding region signature.	298	320	IPR017441	GO:0005524
	Phac6g02987	616	SUPERFAMILY	Protein kinase-like (PK-like)	271	567	IPR011009	-
	Phac6g02987	616	Gene3D	Phosphorylase Kinase; domain 1	261	368	-	-
	Phac6g02987	616	Gene3D	Ribonuclease Inhibitor	27	210	IPR032675	-
	Phac6g02987	616	Gene3D	Transferase(Phosphotransferase) domain 1	369	586	-	-
	Phac6g02987	616	SUPERFAMILY	L domain-like	30	194	-	-
	Phac6g02987	616	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	415	427	IPR008271	GO:0004672\|GO:0006468
	Phac6g02987	616	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	11	577	-	-
	Phac6g02987	616	ProSiteProfiles	Protein kinase domain profile.	292	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02987	616	MobiDBLite	consensus disorder prediction	205	219	-	-
	Phac6g02987	616	SMART	serkin_6	292	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g02987	Phac-Chr6	26090638	26097423	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g02987	1	616	Receptor kinase-like Gene Family	AT4G33430	78.496	0.0	987

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Phac6g02987		Pkinase	3.7e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g02987	K13416		-	gmx:100800522	1147.88