Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02962 ATGATTTCAGGTGGCTCACTTTTTCTATTTGATAGAAAGGTTTTGAGATACTTCAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTGAATACCGAAGGTGATGAGGTCCCACAGGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCTGTCAGCCCATCAAGCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATATCCACCAAATTAGTTCTGGGTTGCGCCCATTACATGAGTCACAACATATGGGGAATGGTCCACTGACAGAAAAGATTGATGGTGGTGTGAACAGTTCATATCATATGCATTCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCATGGGGATAAATTTAGAGGAAATGACACTACGTATTTTGATGGTGAGAAAACACATGGCGTGGCACCATGGGACACTGTCTTGGAAAGCACTGCCAATTTGCATAATGATCCTTCTCTTGCATCATTTCCTTCAATGCCCTCTAGTTCAATGGGTAGTGTCCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAACAGGCAAAAGAGATCTCACCGAGGAAGCAGAGAGCTCTCACTCTTTCCAATCGAGTTGGCAGATTCCTTTTGAAGACAATTCGGGAAATATGCCAATGTCAACCCTAACCCCCCAATCATTTGGTCTGCAATTTGGATCTGATTATGGCACCAGTTCACTAGGGTATGAGACTCGTAATACAAGTTCTGAAATTGCTCCGATCCTGTACAGTTTTAATGGTGATCCAAAAGAGCAGCTCATGCAGAAAAACTATCCACAAGAGCATGCAGATGGACAATCTCAACATACTCTAAAATCCAATTCTGCAATTAAAGTTTCTGATGAAGAATCTGTCAACTATAGCTCAAATGTGAAACGCACACTATTGGACAAAGATGAGAGCCTGAAGAAGGTTGATAGTTTCTCTCGGTGGGTAACTAAAGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCACACCTGGTATTTCTTGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGTCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTTAGATATTGAGGTGTTGATTATTGGATCATTTTTTAAGAGTCAATCGGAGGTGACAACATGTAAGTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCTCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGAGAATTTGATTTCAGAAAAGGCTTTGCTAGAAATGTAGATTTTGCAGAATTTTTTGGCAGTTCAACTGAAATGCTGCTTCATATGCGACTGGAGAATTTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTCTTTTGAGGGTGATATGGAGAAAAGGAATTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATACTCTATTAAGGATGAACCAACTACAGAATTGGATATATCCAAACACGTGGTGAGGGAGCATCTTTTTCACAGGCAGATTAAAGAGAAGCTATACTCATGGCTTCTTCATAAAGTAACTGAGAGTGGTAAAGGGCCCAATGTATTAGACAAGGATGGCCAAGGTGTGATACACTTAGCAGCTGTTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGGCAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTTTCCTGGTGTCCATCGGAGCAGATTGTGGAGCACGGACAGATCCATCTCCTGCATTTCTGTCTGGTAGAGAAGCTGCAGATCTTGCCTCTGAAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCCGAGTGTTCATTAACTCACAAACTTGAAACCATCACAATGGATGATCAAAAAGGTGGTCGACAAGAAATTTCAGGAATGAAAGGGGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCTCTGTGGTGATATGCCAGATGCCCTCTGTCTCAAGGATTCGCTTATTGCTGTGCGTAATGCAACACAAGCCGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGGGGATGATGAGCTTGGATTGTTAGATCAACAAGCCCTATCTCTTCTAGCTTCTAGGGCTTGCAAATCTGGACAACGAAATGGTTTAGCCAATGCTGCTGCAATACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGCCAACGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAACAGTACAAACCAATCATCTGGTCTGTGGGAATCCTAGAGAAGATCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAGACGCAATTAATAAAGTCCCCAGTCAACAAAATGATTCTCCGAGAGAAGATGAAGATGAAGATGATTATGATTTTCTCAAGGAGGGACGGAAACAAAAGGAAGAAAATATCAAAAAGGCCTTATCAAGGGTGAGGTCCATGGTTCAATATCCAGAGGCACGCGCCCAATACCGGCGTCTGCTAAATGTTGTTGAGGACTTCCGTCAACCCAAGGGAACTAACGAGGGTTTGACCAGTTCTGAAGAAGGGACAGTTGATGGTGTGGAGGATTGGATTGATATTGATATGCTTTTAGACGATGACAATTTCATTCCTATAGCATTTAACTGA 3093 0.4164 MISGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVPQDSQKVTSLSTDSVSPSSSLMSLREDADSEDIHQISSGLRPLHESQHMGNGPLTEKIDGGVNSSYHMHSFSGDHGQSSISGTDYIPVVHGDKFRGNDTTYFDGEKTHGVAPWDTVLESTANLHNDPSLASFPSMPSSSMGSVLEQEHTIFGDLLTGKRDLTEEAESSHSFQSSWQIPFEDNSGNMPMSTLTPQSFGLQFGSDYGTSSLGYETRNTSSEIAPILYSFNGDPKEQLMQKNYPQEHADGQSQHTLKSNSAIKVSDEESVNYSSNVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFFKSQSEVTTCKWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFRKGFARNVDFAEFFGSSTEMLLHMRLENFLTLKPVNPSNHSFEGDMEKRNLIFKLISLREEEEYSIKDEPTTELDISKHVVREHLFHRQIKEKLYSWLLHKVTESGKGPNVLDKDGQGVIHLAAVLGYDWAINPIISAGVNINFRDVNGWAALHWAAFCGRERTVAFLVSIGADCGARTDPSPAFLSGREAADLASENGHKGISGFLAECSLTHKLETITMDDQKGGRQEISGMKGVQTVSERTATPVLCGDMPDALCLKDSLIAVRNATQAADRIHQVFRMQSFQRKQLTQYEGDDELGLLDQQALSLLASRACKSGQRNGLANAAAIQIQKKFRGWKKRKEFLMIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKIILRWRRKGSGLRGFRPDAINKVPSQQNDSPREDEDEDDYDFLKEGRKQKEENIKKALSRVRSMVQYPEARAQYRRLLNVVEDFRQPKGTNEGLTSSEEGTVDGVEDWIDIDMLLDDDNFIPIAFN* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02962 1030 Pfam CG-1 domain 4 84 IPR005559 GO:0003677
Phac6g02962 1030 MobiDBLite consensus disorder prediction 98 124 - -
Phac6g02962 1030 MobiDBLite consensus disorder prediction 920 943 - -
Phac6g02962 1030 SUPERFAMILY E set domains 440 525 IPR014756 -
Phac6g02962 1030 SUPERFAMILY Ankyrin repeat 624 734 IPR036770 -
Phac6g02962 1030 ProSiteProfiles CG-1 DNA-binding domain profile. 1 91 IPR005559 GO:0003677
Phac6g02962 1030 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 4 989 - -
Phac6g02962 1030 Gene3D - 849 895 - -
Phac6g02962 1030 Gene3D Immunoglobulins 433 528 IPR013783 -
Phac6g02962 1030 SMART iq_5 871 893 IPR000048 GO:0005515
Phac6g02962 1030 SMART iq_5 848 870 IPR000048 GO:0005515
Phac6g02962 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 899 IPR027417 -
Phac6g02962 1030 ProSiteProfiles IQ motif profile. 849 878 IPR000048 GO:0005515
Phac6g02962 1030 MobiDBLite consensus disorder prediction 98 128 - -
Phac6g02962 1030 FunFam Calmodulin-binding transcription activator 2 848 896 - -
Phac6g02962 1030 SMART CG_1_2 1 86 IPR005559 GO:0003677
Phac6g02962 1030 Gene3D - 608 744 IPR036770 -
Phac6g02962 1030 SMART ANK_2a 673 702 IPR002110 GO:0005515
Phac6g02962 1030 SMART ANK_2a 640 669 IPR002110 GO:0005515
Phac6g02962 1030 FunFam Calmodulin-binding transcription activator 2 433 529 - -
Phac6g02962 1030 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Phac6g02962 1030 Coils Coil 944 964 - -
Phac6g02962 1030 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Phac6g02962 1030 ProSiteProfiles Ankyrin repeat region circular profile. 673 699 - -
Phac6g02962 1030 Pfam IQ calmodulin-binding motif 851 869 IPR000048 GO:0005515
Phac6g02962 1030 Pfam IQ calmodulin-binding motif 874 893 IPR000048 GO:0005515
Phac6g02962 1030 ProSiteProfiles IQ motif profile. 872 896 IPR000048 GO:0005515
Phac6g02962 1030 Pfam IPT/TIG domain 440 514 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02962 Phac-Chr6 25941874 25953041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02962 5 1001 CAMTA Transcription Factor Family AT5G64220 52.668 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phac6g02962 TIG 3.6e-05 CL0159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02962 K21596 - gmx:100818124 1711.04