Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02929 ATGGGTCTGCGTCATCTCACAAACTTGATGACGCCATTGCCACAACTCTGTACCTCACTTTGTCGTGTGAAGAAGTCTGAGGCTTGTTCACCAGATTGCGAAGTTTGCCTCAGGATCTGCCTCACCAATCCCCAATACCCTAATTATGATTCTCCTCCTGCGCCGCCGCCGCCGCCGCCGCCGCCACAGCTTCCGCCTTTCAATCTAGATAACGGCGGCGTAGATGAATCGAGCAGCCACAAAATAGCCACCTATTTGTTCCTTGCTCTTGCGATTCTAACAATTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTACACCAGGTTCAGCTCAAGGAGGAGGGTATCATCGAGGCACCAACCAGAGAGCAGTGGTGGTGATGATTTTGTTGATGAAGAGCATGGAGCTGTGGTGGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCGATTATCAGTGCCATCACAGTTTGTAGGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACCGAGTGTGCTGTTTGCTTGAGCGAGTTTGAAGAGGATGAGAATCTCAGACTTTTGCCTAAATGCTACCATGCTTTTCATTTACCTTGTATTGATACATGGCTTAGGTCTCATACCAATTGTCCCATATGCCGGGCTCCCATTGTTTCTGACCTTGCAACTGCTAGGTTGGACTCTACTTTTCTTGATGCAGAATCCTTTGCAGATACCCATGTGGAAATTTCGGAAAATAGTGCTTCTGATTCTGAATTGGGGAACAGGTCAGAGGAAGAAGGCAGAGTAGAGGGTGAAGGTGGATTTAGGGTTTGTGAAACTGAAACCCCAGTTGAAGAGGTGCCCTACATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATCAATCGTGCTCTTGCCACAGTGGGATCTAATGGTAACTCAAAAAGAGTGCTGGATGATGCTGGTTCTTCTTCAAAGGGGGGTTTTGGAAACGATTTGGCTACCACTTTCAAGGGTAGCTCTTCTTTCAGATTAACAAGGTATCTGCAGGGTGCTCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAATGGAAAGTACCTTCTGTCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGGTTCTCTGAGAAGCTTTTAG 1167 0.4679 MGLRHLTNLMTPLPQLCTSLCRVKKSEACSPDCEVCLRICLTNPQYPNYDSPPAPPPPPPPPQLPPFNLDNGGVDESSSHKIATYLFLALAILTIAFFVVCCRTIYTRFSSRRRVSSRHQPESSGGDDFVDEEHGAVVDHPIWYIRTLGLQQSIISAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARLDSTFLDAESFADTHVEISENSASDSELGNRSEEEGRVEGEGGFRVCETETPVEEVPYILPRRSVSLDSFSVANINRALATVGSNGNSKRVLDDAGSSSKGGFGNDLATTFKGSSSFRLTRYLQGAPSSSMKRSQSYNGKYLLSWYGRNQKKPNGSLRSF* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02929 388 FunFam RING-H2 finger protein ATL54 150 223 - -
Phac6g02929 388 MobiDBLite consensus disorder prediction 247 270 - -
Phac6g02929 388 SMART ring_2 175 216 IPR001841 -
Phac6g02929 388 SUPERFAMILY RING/U-box 169 224 - -
Phac6g02929 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 224 IPR013083 -
Phac6g02929 388 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 78 224 IPR044675 -
Phac6g02929 388 MobiDBLite consensus disorder prediction 50 67 - -
Phac6g02929 388 MobiDBLite consensus disorder prediction 255 270 - -
Phac6g02929 388 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Phac6g02929 388 MobiDBLite consensus disorder prediction 50 71 - -
Phac6g02929 388 Pfam Ring finger domain 174 217 IPR001841 -
Phac6g02929 388 CDD RING-H2_EL5-like 174 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02929 Phac-Chr6 25783154 25784850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02929 82 221 C3H Transcription Factor Family AT1G72220 55.634 6.57e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02929 - - vun:114186636 631.713