Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02908 ATGGCGAGAAAGAAGATAGCGATGAAGAAGATCGAGAACATTAACGCGAGACAAGTGACATTCTCGAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTCTGTGATGCTCAGATTGCTCTCATAGTCGTTTCCGCTACCAGCAAGCTCTTCGACTATGCCACTTCAAGCATGCAACAAATATTTGAAAGGCGAAATCGGCATTTTGGTGTTCAAGGATCAGACATTTCATCTACTGCACAACAGCTTGGAACTGACTCTTTTGACATGCTGCGCAAGGAAATAGTAGATAAGACTCATGAACTGAGTCGGTTGAATGGGGAAGAGTTGCAAGGATTGACAATACAAGAACTGCAGAAACTGGAGGAACTTCTCCTCAGACGTTGGACCACTATTTCAAAAATTAAGGATGAAAAAATTACACAAGAGATCAACAGCCTTAAAACTAAGGAAGCCGAACTTACAGAAGAGAACCAGAAATTGAAGCAGAAGTTGGTTCCAGAACAAAGGCAATGTTATGAGTCAATTACCAGCAGTTCATCTGATTTTCCTCCAGACAATGGCACTTCTGACACATCTCTCATGTTGGGGCTGCGTTTATTTGAATGA 621 0.4203 MARKKIAMKKIENINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVVSATSKLFDYATSSMQQIFERRNRHFGVQGSDISSTAQQLGTDSFDMLRKEIVDKTHELSRLNGEELQGLTIQELQKLEELLLRRWTTISKIKDEKITQEINSLKTKEAELTEENQKLKQKLVPEQRQCYESITSSSSDFPPDNGTSDTSLMLGLRLFE* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02908 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Phac6g02908 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 Pfam K-box region 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02908 206 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Phac6g02908 206 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Phac6g02908 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02908 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phac6g02908 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac6g02908 206 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02908 Phac-Chr6 25683080 25690653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02908 1 202 MADS-box Gene Family AT2G22540 43.220 1.14e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac6g02908 K-box 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02908 - - gmx:100779453 294.278