Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02906 ATGGTGAGGAAGAAGATACCGATCAAGAAGATCGTGAACGTGACTGCGAGGCAGGTGACATTTTCAAAGAGGAAGAGTGGGCTTTTGAAGAAGGCACGTGAGCTTTCTCTTCTCTGTGATGCTGAGATTGCTCTCATGGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACTGAAAGGCATATTTTACGGTCAGAGTTTAATCAAGACAAACTAGACCAGTTACATCCCACGGAACAGATTAGAAGTAATCATGCTTATTTGAAGAAGGAATTGGAAGACAGAAGTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGAGCTTCAAGGAACTACAGAAATTAGAAGCACGACTTGAGTCATCCTTGAACTGTGTTTATAAAGCCAAGGTTCAAAACTTTATAAGAGATATCAATATCCTTACTCAAAAGCAAAACAAACTCATGGAAGATAACCGACTGCTAAAACAGAGGATAAGTTCTAGGAATGAAATTTGTTCAGTCCAGAGACATGAGCATGAAGAAGAGCAATCCTTTGACACCTCCCTCACATTGGGGCTACCTTTTCCTTCTGGCTCAAAATAG 618 0.4061 MVRKKIPIKKIVNVTARQVTFSKRKSGLLKKARELSLLCDAEIALMVFSPGGKLFDYASSSMQKITERHILRSEFNQDKLDQLHPTEQIRSNHAYLKKELEDRSREMRQLNGEELQGLSFKELQKLEARLESSLNCVYKAKVQNFIRDINILTQKQNKLMEDNRLLKQRISSRNEICSVQRHEHEEEQSFDTSLTLGLPFPSGSK* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02906 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02906 205 Coils Coil 149 169 - -
Phac6g02906 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phac6g02906 205 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02906 205 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Phac6g02906 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Phac6g02906 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac6g02906 205 MobiDBLite consensus disorder prediction 181 205 - -
Phac6g02906 205 MobiDBLite consensus disorder prediction 191 205 - -
Phac6g02906 205 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02906 Phac-Chr6 25673248 25679492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02906 1 200 MADS-box Gene Family AT2G22540 43.568 4.97e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac6g02906 K-box 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02906 - - gmx:100779995 316.62