Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02879 ATGGGTAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGTTTCAGAAGAGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTCACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTACGCCAAAAGGGAAATCTCATTCATCAGGATAATGTTGAACTTTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTATGGAAGCAGGAGCACAGGTGAAGAAAATGCGGCATCCAATCCTTCTTTCATGGTCAGAAATGGATATGATTTACATGCACCTATCGCTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAATCATCAGCCAAAACTGCAGCTGCATTAGCAAAAAACTGTTCAGTAATCGGGGAGGGTTGTCATTTTGTGACAAGAAGCAACTATGTTACAACTTCTGCTTAG 780 0.4141 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPVSEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVYGSRSTGEENAASNPSFMVRNGYDLHAPIALQLSQPQTQYSESSAKTAAALAKNCSVIGEGCHFVTRSNYVTTSA* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02879 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Phac6g02879 259 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02879 259 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac6g02879 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 Coils Coil 120 140 - -
Phac6g02879 259 Coils Coil 163 183 - -
Phac6g02879 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Phac6g02879 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Phac6g02879 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac6g02879 259 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Phac6g02879 259 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02879 Phac-Chr6 25532057 25545340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02879 1 235 MADS-box Gene Family AT2G14210 61.864 7.41e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac6g02879 K-box 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02879 K09264 - gmx:100808145 420.239