Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02835 ATGGAAGCCTCAGAGCAGAACAAATCAAAGGTGGTGGTGATTGATTCTTTGCAGTCATGGGATTTCTATGTTACCCAGGCCACTAATCAGAATTCTCCTGTTGTTGTTCACTTCACTGCTTCATGGTGCATACCGTCTGTGGCTATGGATCCTGTTTTTGAAGAATTGGCTTCAAGCTATCAGGATCTTCTGTTTCTCACTGTTGATGTTGATGAAGTCAAGGAAGTGGCCACCAAAATGGATGTAAAGGCAATGCCAACATTTTTGCTGCTGAAGAACGGTGCTGTAGTGGACAAGGTGGTTGGTGCCAATCCAGAAGAGATAAAGAAAAGGATAGATGGGCTTACTGAGTCCACTCATGTCTCACTGGCATATGTGGAGGAAGATGACCCGTTGGGACTTTCGGATGGTTTCAAGGAAAACGGGTCAAAAAAACGTTTAAGGTCACCTGGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTATCCTAGACCCTGGAAGGCCTCTTAAAATGGACAAGGCTATTATATTAAGTGATGCAGTACGATTGGTGTCTCACTTACGAGAGGAAGCTCAGAAGCTACGAGAGTCCATTGAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCGACTAAAAGCAGAGAAAGATAGCCTTGAACAGAAGATTGAGGCATTCACTTCACAACCTAGCTTTCTTGGTGCATTTCCAGCACCAGGACAAGTTGTTGGTAGCAAGTTGGTGCCCTACATGGGCTATCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCAGGCCACCAGTTGCATAA 909 0.4499 MEASEQNKSKVVVIDSLQSWDFYVTQATNQNSPVVVHFTASWCIPSVAMDPVFEELASSYQDLLFLTVDVDEVKEVATKMDVKAMPTFLLLKNGAVVDKVVGANPEEIKKRIDGLTESTHVSLAYVEEDDPLGLSDGFKENGSKKRLRSPGSKACKEKMRRDRLNDRFLELGSILDPGRPLKMDKAIILSDAVRLVSHLREEAQKLRESIENLQGKINELKAEKNELREEKQRLKAEKDSLEQKIEAFTSQPSFLGAFPAPGQVVGSKLVPYMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02835 302 Pfam Thioredoxin 19 112 IPR013766 -
Phac6g02835 302 CDD TRX_family 26 113 - -
Phac6g02835 302 Gene3D Glutaredoxin 1 122 - -
Phac6g02835 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Phac6g02835 302 PANTHER BHLH TRANSCRIPTION FACTOR 125 302 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phac6g02835 302 ProSiteProfiles Thioredoxin domain profile. 1 117 IPR013766 -
Phac6g02835 302 CDD bHLH_AtILR3_like 153 228 - -
Phac6g02835 302 Gene3D - 139 197 IPR036638 GO:0046983
Phac6g02835 302 Gene3D arf6 gtpase in complex with a specific effector, jip4 198 251 - -
Phac6g02835 302 SUPERFAMILY Thioredoxin-like 7 117 IPR036249 -
Phac6g02835 302 SMART finulus 154 205 IPR011598 GO:0046983
Phac6g02835 302 Coils Coil 189 251 - -
Phac6g02835 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 219 IPR036638 GO:0046983
Phac6g02835 302 Pfam Helix-loop-helix DNA-binding domain 152 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02835 Phac-Chr6 25252578 25258306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02835 129 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.257 6.43e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g02835 Thioredoxin 5.9e-22 CL0172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02835 - - ccaj:109814067 293.508