Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02823 ATGGAGTATGAAGATGAGGACTGGTTATGTGTTACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGCTTGTAGCAAGCAAGGGATAGGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTTCAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTCTTGATGCTGCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATTATTGAAGATGCTATCACGTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAGATGGAAGCAACTTCAGAGGAAACAGCAGAGGCAAAAATAGATGAAATTGATGCTGCACAAGATATGAAGAATTTGGGGATACAGGAAGAGGTTAGAGTGGCACAAATAGATGGGAATAAACTGTGGGTTAAGATCATCATTGAGAAGAAGAGAGGAAGATTCAGGAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTACAAGCTGTATACAGGACAGAGATGGTGAAAAACTTGAAATTCAGCAAACCAAGGATTTGTTGCAAGATATTATCAATGGCATGTAG 642 0.4019 MEYEDEDWLCVTMEEFSLATENACSKQGIGRKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMEATSEETAEAKIDEIDAAQDMKNLGIQEEVRVAQIDGNKLWVKIIIEKKRGRFRKLMEALNNFSIELIDTNLTTTKGAFLITSCIQDRDGEKLEIQQTKDLLQDIINGM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02823 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 107 IPR036638 GO:0046983
Phac6g02823 213 SMART finulus 47 96 IPR011598 GO:0046983
Phac6g02823 213 Coils Coil 80 114 - -
Phac6g02823 213 Pfam Helix-loop-helix DNA-binding domain 45 91 IPR011598 GO:0046983
Phac6g02823 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 30 207 - -
Phac6g02823 213 Gene3D - 33 107 IPR036638 GO:0046983
Phac6g02823 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02823 Phac-Chr6 25203652 25205114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02823 42 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.328 1.54e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac6g02823 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02823 - - vum:124819567 375.555