Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02772 ATGGGGGGGAAATCGACGCCGGCGGAGGAAGGAGAAGCGGTACCAGAGCATCTACGGTGCAACCGGACGGACGGGAGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCGGCATCGGCAGAACAAGGAGACGGTTCCGGAGTCGCTGAAGCTTCAGAGAAAGAGGCAAAACGATGCCGTTGAGACTAAGATTGGGGCGAAGCGGAAGCGCAAATCGAGAGAAGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGAGTTGAGGAAGGAGTTGCCAAACGGGGTTATGGCTATCGCTTCCGCTTCGACGCCCAATGTGGCTTCTTGTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGTTTTGCAGTGTGGACGAAACTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCCTGCACTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGTACATGTAAAGATTGCTTGGCACGTCAACATGAAGACAGTGAAAGTAAGGAACATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTATGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGACTACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGAAAAAGAATTAATGACATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGCTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAACAAAACAACTATTCTATATCCAAGCTACCTGACAGAATAAGTGCTTGCATTTCTAGCAAAAGATACCTATTGGATGATAAGGCCATTTCTAATGGCAATTTAACTGATACCTCAATGTTAACAGAGTGGACAAGTTGTAATGGTGCTGCCATGGTATCATGCCCACCTACAAAGCTTGATGATTGTGGTAATAGCCACCTTGATCTGAACTATGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAATGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGTTGCCCAATGTGCGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGCTACCGGAAGCGGCTCAAAGGGAAGATTCTAATGATAATTATTTGTTTTATCCTACAGTTTTTGACATCGACAGCAATCATTTTGAACACTTTCAGAAACACTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTCTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAACTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCTTTGTCAGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGAGATAGGACCATATCTTTATATTTCATATGGCTGTGCTGATGATGAAGCTGATTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAATGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTACTGAAAAAACACAAAGTTCTATGTCAAAGGGTGTCATCTAAAACTACTGCTGAGCATGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGACTTTTTAAGGAGAGTCAATAGAACTTCTTGCATCTCTAGTGAAGCCAAAACAATATGCAATCAGAATTTAGACACCAATATTTCCGGTGATGAAGAATGTGGTTCTTATTCTGAAACTGAAAAGGCACAACGCTCTTTACCTTTCCACAGCATAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTAGAAATTCCTTTGAAAACTCAGACAATGTTAAAAGGAAGAAGGCTACAGCGAATGCTGGGGCTCAATGGGATGTCTTTCGAAGGCAAGATGTGCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGATGAATTTTCACATGCTAGTGAACATCACGAGAAGATGATTCATCCACTTCTTGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTGTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTTGTATCCCCTGAGAATGTTGCTGAGTGTATCCAATTGGTTGATGAGGTCCGGCTGCTTCCAGAAGATCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAGGAAATACGTGAGCTTACATGCAGAACATGA 2868 0.4128 MGGKSTPAEEGEAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGRHRQNKETVPESLKLQRKRQNDAVETKIGAKRKRKSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLPLNLNLHSNHELRKELPNGVMAIASASTPNVASCSRYFRSKNVERGSVLQCGRNLKKGRRKKCHWCQRSDSCTLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLARQHEDSESKEHLAGKNRVDRILHFHYLVCMLLPVLKQIKEDYHVGVETKAKIKGKRINDIIIKPVKFGCNEKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNYSISKLPDRISACISSKRYLLDDKAISNGNLTDTSMLTEWTSCNGAAMVSCPPTKLDDCGNSHLDLNYVFPLSWIKEMEANAEEIVCSYDFPETLDKSSSCPMCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVFDIDSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAELIDALPIQEYMNPLSGLLNLAANLPQGSTKHEIGPYLYISYGCADDEADSVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQRVSSKTTAEHAEDREQNEMQSLVREGTDFLRRVNRTSCISSEAKTICNQNLDTNISGDEECGSYSETEKAQRSLPFHSIVLSTEMSPDHNPRNSFENSDNVKRKKATANAGAQWDVFRRQDVPKLLEYLKRHSDEFSHASEHHEKMIHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPCGCPYQIRNPKCCVHVELEFVSPENVAECIQLVDEVRLLPEDHPAKVEKLEVKKMALHSMSTAIKEIRELTCRT* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02772 955 Pfam JmjC domain, hydroxylase 806 901 IPR003347 -
Phac6g02772 955 Gene3D Cupin 487 926 - -
Phac6g02772 955 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 953 IPR045109 GO:0032454|GO:0033169
Phac6g02772 955 Pfam WRC 15 55 IPR014977 -
Phac6g02772 955 ProSiteProfiles JmjC domain profile. 614 918 IPR003347 -
Phac6g02772 955 SUPERFAMILY Clavaminate synthase-like 494 943 - -
Phac6g02772 955 ProSiteProfiles Zinc finger RING-type profile. 181 227 IPR001841 -
Phac6g02772 955 MobiDBLite consensus disorder prediction 777 800 - -
Phac6g02772 955 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Phac6g02772 955 Coils Coil 85 112 - -
Phac6g02772 955 SMART cupin_9 595 918 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02772 Phac-Chr6 25032954 25039505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02772 11 54 GRF Transcription Factor Family AT2G22840 50.000 4.44e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac6g02772 JmjC 2.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02772 K15601 - gmx:100799234 1636.31