Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02744 ATGGCTTCGGCTTCTTCTTCTTCGTCCAAACTGTGCTTTAATTCTGACTGCAAGGAATTGAGGCCCGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAGCGGAGAACTAGCCGAGCTCTGTGATCGATGCGGCGCTGCTTTTGAAGACGGGAAGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAATTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGTTGGATCCTGGAGGAATTGAATGTTATACATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCGGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCATCCGACCTTATTTCAGATGTTCCTTCTTTAGCTGAATTATCCAGTAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAGTGAGGATTTTCCTGGATTACCAGTTCATTGGAATGTCACCATTTGCCCACGAGATATGAAGCATATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTATGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTACCTAGTTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCACCCTCAACAGACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAAGGAAAGGAGTGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCAGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCCGCGCCATCCGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCCGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGTAAATCATTAATATCTAGGAAAAGAAAGAGCGGCATATTGGGCTCAAAGAGTAAACGACTAAGAATTGAAAATGAGGATTTAATAGAGTTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGCCCTCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGAATGTCTCAAGTGGCGCAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAACAACTTGAGAATTTGCTACCTCCGTGTAATTCAGCTGTTCCCAAGAGAATGAAGGCCACCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCGTCAGCCCAGGCCACAACTAAGCACCCACGCCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCATACCCTTATGTTACGGCGTGAGAAGAAACAATCCGAAAAAGAAGCAGAGACAACTCGTAAAAAACAACAGCAACAACATCCTCAACCTCTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGATAGCAGCCCGAATCAGAACAGAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTGCCACTGAGAGATATCTGAAGCAGCAGACTGTGAACTCCGGTACTGGAGATCCTGCAGGCAGTCAGGCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAGGAACATGGCCAATCTTTGTCCATGA 2637 0.446 MASASSSSSKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGAAFEDGKFCEIFHSNASGWRSCETCRKRIHCGCIVSSHSFMLLDPGGIECYTCARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSSDLISDVPSLAELSSSFDKMYCNERLPASALEKKSEDFPGLPVHWNVTICPRDMKHMNGMRNEDKASSCLNMCQQPSSMKEESSPQPFGLPVPSSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAAPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEECLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVPKRMKATKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNREGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDAATERYLKQQTVNSGTGDPAGSQAQLVGDAMREDKLSNGVTHGSSSHSTDRNMANLCP* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02744 878 MobiDBLite consensus disorder prediction 439 455 - -
Phac6g02744 878 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Phac6g02744 878 MobiDBLite consensus disorder prediction 228 265 - -
Phac6g02744 878 CDD B3_DNA 334 435 IPR003340 GO:0003677
Phac6g02744 878 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Phac6g02744 878 Gene3D - 568 621 - -
Phac6g02744 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 840 - -
Phac6g02744 878 MobiDBLite consensus disorder prediction 719 734 - -
Phac6g02744 878 MobiDBLite consensus disorder prediction 752 770 - -
Phac6g02744 878 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Phac6g02744 878 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Phac6g02744 878 MobiDBLite consensus disorder prediction 228 298 - -
Phac6g02744 878 SMART B3_2 336 437 IPR003340 GO:0003677
Phac6g02744 878 Gene3D - 314 440 IPR015300 -
Phac6g02744 878 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Phac6g02744 878 MobiDBLite consensus disorder prediction 858 878 - -
Phac6g02744 878 MobiDBLite consensus disorder prediction 719 878 - -
Phac6g02744 878 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Phac6g02744 878 MobiDBLite consensus disorder prediction 826 841 - -
Phac6g02744 878 MobiDBLite consensus disorder prediction 434 460 - -
Phac6g02744 878 Coils Coil 718 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02744 Phac-Chr6 24848263 24860692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02744 187 838 B3 DNA Binding Superfamily AT4G32010 43.878 7.47e-167 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac6g02744 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02744 K09287 - gmx:100782114 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02744 6 24848263 24860692 Phac6g02744 6 24848263 24860692 ECH