Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02706 ATGATGGCGGATGAGGGATTCGGTTACACGTGCTTCTTGGGCGGTGACGGGAACGCCGCCGATGATGACAAGTTATGCATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGATACCGATCCTTCCGAGAGTAGTCCCGAGGATTTTTCATTAAAAAATATTTCACCTGGTGAATCTGGCATCCATGGTAGTTTTCTACTTCAAAATGGGAATTCTGTTCTTGAATGTGATAATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTTCCCAAATGCTCTTGCTGGTGGTTACATGGACCATGAAGGTGATGATTTTTGCATCACAGAAAGGACAGAAGTTTCCAATTGTGAGATGCCTGCTTACATAGGCACAAGGTTCCCTGATCCTGAGGTGAATTCAAGCAATGTAGCTGTTTGTGGAGATAGTTTGAAGCTGACTATGTGGAAGTGTGAGAATGATAGTCAAATCAAGCATGTAGGGTATGGTGCAGAATCTGAACGTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAATATTTGATGATTATGAAACCTATATGAAAGACATAGTTGGACCTTCTGGTAAACAAGAAAATGACTCATGTACATCGTTTGTGGATGCTGATAGATCATCTCATATTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCTTCTTTTAATACTTTCCAAGGTATGGATGATAGACCTGCTCTTGCCAACACCTCTGATTGTTTGTTTAATGGTGCTTATCCTCACGTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTTAATAAAATGGAGTTATTTACTGATACAAGTGGTGGCATGCATTCCATCATCAATGCGGGAATATCTTTTCAAGACACTCAATATACCTTCCCAGATACTAGATATGCATCATGTTTTCCTGGTAACGTTCTTGTTAAAGACAGTGCATCAGTGCAACACTCAACTTGTGCTTCGTATATTTCAAGTGAAGGTCAAGAAGCGAAGCAACTACCTGGTACTTTTCCTGCTGTTGGATCTGAGAGCAATGATTTTTTCAAGTGTGAGGATAGTGTTACATTCACAATGACCGAGAAAGCCAAATATTATCAAGATGCTATTGGTGGGGCTGGCAATTACTTTCCTGGAAGTATGGGAAATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATGTCCAAACATCAATTGCCAGTGGGAAGTTGTATAATTGTGTTATGAGTGAAGGAGAGGGAAAGTTAATTGAACATAGAAGTATTGATTCTCAACTTTCAAACGGAAGTATTGACAGATCCAATATTGAGGATGAATCTGATGTTTGTATTATTGAAGACATCAGTTACCCTGCACCTCTAAGTCGATCAGCAGAGCTTGGGAATTCTCTCAACACATTACAACCTTCTAGATGTGGTTATACTACTCATTCTTCTACGGTGGGACTTATGAGACCCAAGGCACTTGACGAGCAGTACATATTACGGGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGCCCACCAGATGGACTGCTGGCAGTTCCCCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACTTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAATGCAACCTTGCAAAGAATAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAACTTCTTGAGGGTGGTATAGTGAAGAATGAGTGTAATATGGTTCAGGATTTGTCTTGTAGAAATCCAAACAAGAACATGAATTTGTTAATGCATTTAAAGGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCGACTAGTGTTCTACGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGAAAAGCAAATCTTTCTGTGCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAAGAACTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCTTTCCACTTCTAAAAGTAGCAAGAAGGGATTGGACACTGCAATTCTTGACTCTGTTGCTCGACCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCGAGGGCTTGTTGGGGTCTTAGAGCGAAGCGTAGATGGTGCTTATCAGGGACTCCTATTCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACCATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCCTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAGTTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTCCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAGCGATTATCTCTTCTAAATTGTTTGGAAGCTTCTTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTGTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAGTCAGTGCCCCGCTACAAACTGCAAAATTAGACTAAGCATGTCTTCAGTATTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTAATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTGTTCTGATAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTACTTTCTTTGTCTAAACCACAATGCTGTTCTCTCCAAAGCAATTCTGTGCAGAGCACTCCTGGCGAAACTACTGATGGCCTCGGGAGCTCATCTTGTGCTGACCGATTGAAATCCTCAAACGAATTCCCTGAGAATCAAATTGTGTTAGAGAGAAGCTCTAATAATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACCAGGATGCTTGATTTACTTGAAGCATGTCTTAAAAATTCTTCCATTCAGTATAGAAGACTTGATGGAACAATGTCTGTTTCTGCAAGGGATAAAGCTATTAAAGATTTTAACAACCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCACATCGTATAGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGATCGTATTTTAGCTCTGCAGGTATTTTCTTTTGGCTGCCTCGTAAACAATCACGATTTAATTACAATCATTGAGTATATGAGAAAGAATACCCAATGCAATAGTCTTGGTATGGTTATAAAGGCTACATTAGTTTATGTATCTTTGGATGAATACTTTTCTTGA 3906 0.4012 MMADEGFGYTCFLGGDGNAADDDKLCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHGSFLLQNGNSVLECDNENQGPSPQTFSFPNALAGGYMDHEGDDFCITERTEVSNCEMPAYIGTRFPDPEVNSSNVAVCGDSLKLTMWKCENDSQIKHVGYGAESERASHGSIIENIDVIFDDYETYMKDIVGPSGKQENDSCTSFVDADRSSHIATSTDSSICQGSNVPNDFSDYYPSFNTFQGMDDRPALANTSDCLFNGAYPHVWENEKMTRNMKVNKMELFTDTSGGMHSIINAGISFQDTQYTFPDTRYASCFPGNVLVKDSASVQHSTCASYISSEGQEAKQLPGTFPAVGSESNDFFKCEDSVTFTMTEKAKYYQDAIGGAGNYFPGSMGNLNLKPFDKSLYNVQTSIASGKLYNCVMSEGEGKLIEHRSIDSQLSNGSIDRSNIEDESDVCIIEDISYPAPLSRSAELGNSLNTLQPSRCGYTTHSSTVGLMRPKALDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNLAKNSELETLNLDADDDQLLEGGIVKNECNMVQDLSCRNPNKNMNLLMHLKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKRTYDDPAVSSKKRKCLSTSKSSKKGLDTAILDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDSQCPATNCKIRLSMSSVFSKVTLNSSFSDQACNNLPGYSGCEVDESEFCSDSQPYNSSKIRAALEVLLSLSKPQCCSLQSNSVQSTPGETTDGLGSSSCADRLKSSNEFPENQIVLERSSNNSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAIKDFNNLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQVFSFGCLVNNHDLITIIEYMRKNTQCNSLGMVIKATLVYVSLDEYFS* 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02706 1301 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 553 821 IPR014001 -
Phac6g02706 1301 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 631 719 - -
Phac6g02706 1301 ProSitePatterns Zinc finger RING-type signature. 990 999 IPR017907 -
Phac6g02706 1301 SMART ring_2 975 1013 IPR001841 -
Phac6g02706 1301 Pfam Zinc finger, C3HC4 type (RING finger) 975 1011 IPR018957 GO:0046872
Phac6g02706 1301 Pfam SNF2-related domain 558 936 IPR000330 GO:0005524|GO:0140658
Phac6g02706 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 968 1025 IPR013083 -
Phac6g02706 1301 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 741 871 - -
Phac6g02706 1301 SMART helicmild6 1147 1230 IPR001650 -
Phac6g02706 1301 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1117 1279 IPR001650 -
Phac6g02706 1301 Gene3D - 1026 1266 IPR027417 -
Phac6g02706 1301 SMART ultradead3 534 836 IPR014001 -
Phac6g02706 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1256 IPR027417 -
Phac6g02706 1301 CDD DEXDc_SHPRH-like 538 859 - -
Phac6g02706 1301 SUPERFAMILY RING/U-box 972 1020 - -
Phac6g02706 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 859 IPR027417 -
Phac6g02706 1301 CDD SF2_C_SNF 1132 1240 - -
Phac6g02706 1301 Gene3D - 506 599 IPR038718 -
Phac6g02706 1301 Pfam Helicase conserved C-terminal domain 1128 1230 IPR001650 -
Phac6g02706 1301 Gene3D - 635 872 IPR038718 -
Phac6g02706 1301 ProSiteProfiles Zinc finger RING-type profile. 975 1014 IPR001841 -
Phac6g02706 1301 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 375 1254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02706 Phac-Chr6 24663485 24671712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02706 427 1254 RAD5 or RAD16-like Gene Family AT1G61140 59.600 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac6g02706 SNF2_N 7.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02706 - - gmx:100805307 1894.4