Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02680 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGATTCTTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAGATGAGAATGTCATACAGTATGGCAGCACACCTATTTATCTTTTTGGTGCAATGGACAGATTGCAATCTTGCCGGAGCCCTAGGACTGTTAAGAATCCTAATATACAAGGTGTATGTAGATGGGACAACTACCATGTCTACCTATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTTATATATCCCTCTTTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTCGGAGAGGTATCGGAAAAGAGACGAAGAGGAGCACAGACAGCTTTCGGTTATAGATATTGAAAGGGAAGAAGAATGTGGAATATGCATGGAAATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTTATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTCAAGAGAGTAAACTCAGGTGATCTGTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGACAACAGTGACAAGGGAGAATCTTAAAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.4153 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFIFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTYERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCSERYRKRDEEEHRQLSVIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMTTVTRENLKRLFMYIDKLPLIIPDSLFDTYDSHLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02680 247 SUPERFAMILY RING/U-box 143 194 - -
Phac6g02680 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 216 IPR013083 -
Phac6g02680 247 SMART ring_2 151 188 IPR001841 -
Phac6g02680 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Phac6g02680 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Phac6g02680 247 FunFam RING/U-box superfamily protein 118 198 - -
Phac6g02680 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Phac6g02680 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02680 Phac-Chr6 24482486 24487850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02680 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.44e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02680 K25840 - gmx:100789769 476.092