Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02663 ATGGCACTTGAGCACTACATTTCCGGGGATCTGAAAACCATCCAAGATGCTGTGACCGAGACAGAAAACTCTGATGGTTGTTTTGATTGCAACATCTGCCTAGAATTTGCGCATGAACCAGTGGTGACCCTATGTGGCCACCTCTATTGCTGGCCATGCATCTACAAGTGGCTAAGTGTCCAAAATGATACTCTTACAACTAGTGAGCGCCCTCAGTGCCCCGTTTGCAAGGCTGTTATATCCAACAGCACAATGGTTCCACTCTACGCCCGTGGCCATGCCACGGCTGAAGGGATAACATCATCTTGTGATGTTTTGATACCTCCAAGACCACCTGCTTCATGTGCTCAAGAACTTGTGGCAACATCATCTCGAAGGGGTCAGCAGCACCTTCCATATCGTAATCCTTACCAGGGTCACTACTTCAGCTCTCGTCCATACCAAGAAGAGGACTCCACTTCACGAATGCTGAATCTTGGATCGTACCACCACCCTGTGACTGGGATGTTTGGGGAGATGGTTTATTCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGCTGATGGGAAGTTCTACCCCTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTCTGCTGCTTCCTTATTTGTCTTCTTGTCTTCTAA 696 0.467 MALEHYISGDLKTIQDAVTETENSDGCFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLSVQNDTLTTSERPQCPVCKAVISNSTMVPLYARGHATAEGITSSCDVLIPPRPPASCAQELVATSSRRGQQHLPYRNPYQGHYFSSRPYQEEDSTSRMLNLGSYHHPVTGMFGEMVYSRVFGNPENLYAYPNSYQLMGSSTPRLRRQEMQAHKSLNRISIFLFCCFLICLLVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02663 231 SMART ring_2 30 76 IPR001841 -
Phac6g02663 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Phac6g02663 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac6g02663 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Phac6g02663 231 SUPERFAMILY RING/U-box 25 90 - -
Phac6g02663 231 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Phac6g02663 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Phac6g02663 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02663 Phac-Chr6 24402653 24404750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02663 23 217 C3H Transcription Factor Family AT4G27470 42.439 4.77e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02663 K10666 - gmx:100816864 387.497