Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02630 ATGGAAGAAAGTTGGAGTGAGGGGAAAAGGAGCATGAATTACAAGGATGATGAGGATGATTATGAGGAAGAAGAAGAGGAGGAGGGCAGTGAGTACGGCGAGGATGGTAGGAAGAAGAGGGTGGCGCCTAACAAGAGAGCCTCCAAAGCTGGTGGCTCAATGCCACCTTCATGTCAAGTTGATGGCTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGAGCACCACCAACGGTTTTGCCAACAATGCAGTAGGGACATTGTCTGCGTTCAAGAATAACATAGAATGA 303 0.4818 MEESWSEGKRSMNYKDDEDDYEEEEEEEGSEYGEDGRKKRVAPNKRASKAGGSMPPSCQVDGCNADLSDAKPYHRRHKSTTNGFANNAVGTLSAFKNNIE* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02630 100 ProSiteProfiles Zinc finger SBP-type profile. 55 100 IPR004333 GO:0003677
Phac6g02630 100 Gene3D - 48 91 IPR036893 GO:0003677|GO:0005634
Phac6g02630 100 MobiDBLite consensus disorder prediction 1 63 - -
Phac6g02630 100 MobiDBLite consensus disorder prediction 17 31 - -
Phac6g02630 100 SUPERFAMILY SBT domain 56 78 IPR036893 GO:0003677|GO:0005634
Phac6g02630 100 MobiDBLite consensus disorder prediction 1 16 - -
Phac6g02630 100 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 78 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02630 Phac-Chr6 24198565 24199976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02630 39 78 SBP-box Gene Family AT1G27360 54.545 2.74e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac6g02630 SBP 6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02630 - - vra:106775516 127.872