Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02622 ATGTCTCTCCCTGATTCTCCTGTGCCCGTTGAAACCGATCCATCCGAAGACGAAGAGCAAGTCGAAGAAGAAATAGAGGAGGAGGAGGAGGAGGAAGCTGAGGAAGAAGAGGAGATTGAGGAAGAAGTAGAAGAGGAAGTAGAAGAAGAAGAGGTGGAGGAGGAAGAGATTGAGGAAGTAGATGAGGAAGAAGTGGAGGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGACGAAGAAGTAGAGGAAGTGGAGGTAGAAGAAGAAGAGATAGAGGGAGAAGAAGAAGAAGTAGAAGAAGTTGAGGTAGACGAAGAGGAAGAGGAAGAACAAGAAGTAAAAGGAGAGGAAGAAGTCAAAGAGGAGGAAGGAGAAGAAGAGAAACAAGAACAAGAAGAAACATTGGAGGATAAGAAAGAAAGGCAACAACAGAAACAAAAAGAAGCAGTGGAGGAGAAGGAAGGTCAACCACAACCACAAGAAAAAGCAGTGGAGGAGCAGAAGAAAGAGCAACAACGACAAGAAGAAGCAGTGGAGGAGAAGGAGAAAGAACAACAGCAGCAACAAAACGAAGCAGTAGAGGAGAAAAAGAAAGAGCAACAACAGCAACACGAAAAAACTGTGGAGGAGAAGAAGAAAGAGCAACAATTGCAACAGGAAGAAGCAATGGAGGAGGAGGGACGACAAAAAGAAGAAGTGGGGGAGGACAAGGGTCGGAAAGATTTGAGCCTACATATGGAGTCTAAGGAGCAAGGCAAAAACTTGGGGCCAGATTCTTCTGTGGCTGAAAACACTGAAGTAATTCCATCATCTAGTGTGCATTGCATGGAAGAGAATGATAACATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATCGAAAAAGGAAGAGTTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCAAGAGAAAATCTGACTTCTGTTGAAAATAGCAGAAGTAAAGGATTAGAAGTTGACGGTGAAAATGCTGGATCCCTTCTGCAGAAGGAAACACACAGGGGATACAGTGAGTTAGGTTGCAATAGCAAAGCTAATTTATGTGATGATAATGATATTGATTCTGGGGCCAGGGCTTCCAAACCATCTAGTGATACTGGACAAGATATGGTCATTGGCCTCTTTCCCAAAGATTGTCTTGTTGAGGATGCTAATGGTGGTCAGAATTCTAGGAACAATATCACACAGTTAGAGATGGAGTCAAGGGGTGATATGAAGCAAATGCTGACAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGAATAAAAACAGAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAGGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGTGGATAAGACAGATCAGGAGGTTGAAGCTGACTTAGCTACTGTTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTCAGAGAATAAGGATGAATGAGCAAGAAGAAACCCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTAAGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAGCCCGAAGCAGGATGGAATGGCCACTCTTCGGAATCAACATATGTACAAAGGATATGCTTCCACTCTTTTGAGCCATTCACCAAATTCAAGGCAGGAAGATTTTCCTCTAGTTAGTTCGTCCAGGGCTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATTACTTCCATGAATGTATCATCTTCTGGAGATCTTTATGACCCTCTTCGAGATAGCATTGAGATACCTAATATAGGGGATGGATCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGGACAGGCTTCAACACAGGCTCCGATATATGGTGATTCTGCTGTAGTTGGGAAACACATGTCCAGTCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTATGAAACTGAGCCAAACAAAAATTCTGTTCCTCATGAAAAAGATTATCTTCCTACTGAAACAGAGATAACATCGGGAACTTATGTAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTTGGTGTTGCAGATAATACAAAAAAAGAGGGAGACATGACTGAGCATGATACTAGACATCACAGCGAAGGATCAGGGCACAAAAAAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATGGATGTTGACTTTCCGATGGATGGCAGCATGCAGAAGGAAGTGAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTCAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTCAGCAAGGATGAATATATTATGATAGTCAGAAAATCTGTTGACAAGGTTGTTAGCAGCATAGAGCCCCATCAGATTCCGACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTGCAAGGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2601 0.411 MSLPDSPVPVETDPSEDEEQVEEEIEEEEEEEAEEEEEIEEEVEEEVEEEEVEEEEIEEVDEEEVEEEEVEEVEEEEEDEEVEEVEVEEEEIEGEEEEVEEVEVDEEEEEEQEVKGEEEVKEEEGEEEKQEQEETLEDKKERQQQKQKEAVEEKEGQPQPQEKAVEEQKKEQQRQEEAVEEKEKEQQQQQNEAVEEKKKEQQQQHEKTVEEKKKEQQLQQEEAMEEEGRQKEEVGEDKGRKDLSLHMESKEQGKNLGPDSSVAENTEVIPSSSVHCMEENDNMLKISVPSCEILTSKKEEFHLKYDISSHSKSRENLTSVENSRSKGLEVDGENAGSLLQKETHRGYSELGCNSKANLCDDNDIDSGARASKPSSDTGQDMVIGLFPKDCLVEDANGGQNSRNNITQLEMESRGDMKQMLTRTRSLSPSAENKNRNKRPKIICDFFAKGWCIRGSSCSFLHIKDSVDKTDQEVEADLATVHQKRKLKVEEGVRENVQRIRMNEQEETPSWHPSQEKQNFKLRDNLFPENRFAFSSTSNYFSPKQDGMATLRNQHMYKGYASTLLSHSPNSRQEDFPLVSSSRAPSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSSGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNGQASTQAPIYGDSAVVGKHMSSLNDDKSSVSSHNKFYETEPNKNSVPHEKDYLPTETEITSGTYVNYQNGKIGTGQNTFGVADNTKKEGDMTEHDTRHHSEGSGHKKKRGDRDKKNHEMDVDFPMDGSMQKEVKALKMLRAALVDHVKELLKPVWHEGRLSKDEYIMIVRKSVDKVVSSIEPHQIPTIDTAKQYVSSSRVKIARLVNGYVNKYGKS* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02622 866 Coils Coil 162 229 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 11 132 - -
Phac6g02622 866 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 442 461 IPR000571 GO:0046872
Phac6g02622 866 Coils Coil 15 157 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 672 700 - -
Phac6g02622 866 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 31 865 - -
Phac6g02622 866 Gene3D - 428 512 - -
Phac6g02622 866 SMART c3hfinal6 438 463 IPR000571 GO:0046872
Phac6g02622 866 MobiDBLite consensus disorder prediction 723 774 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 254 269 - -
Phac6g02622 866 SUPERFAMILY CCCH zinc finger 437 461 IPR036855 GO:0046872
Phac6g02622 866 MobiDBLite consensus disorder prediction 308 336 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 133 253 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 672 691 - -
Phac6g02622 866 MobiDBLite consensus disorder prediction 1 269 - -
Phac6g02622 866 ProSiteProfiles Zinc finger C3H1-type profile. 437 464 IPR000571 GO:0046872
Phac6g02622 866 MobiDBLite consensus disorder prediction 736 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02622 Phac-Chr6 24167002 24176277 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac6g02622 zf-CCCH 7.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02622 - - pvu:PHAVU_006G183400g 1261.9