Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02617 ATGGCTCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGGTAACGCCGGAGTCAAGGAGGCGCATTTTCGAGGAGTCAGGAAGAGGCCCTGGGGGAGATACGCCGCTGAGATTAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACGGCGGAGGAAGCGGCGCGTGCCTACGACGCCGCCGCTCGCGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCATTCGATAATAATGTCAAGAACGCCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGATGTCGCCGCCGATTCCTCCCCGCTTGACCTCAACCTCGCCCCAGCCGCGGTCTCCGCTGCTCGCTTCCCCTTCCAGCAGCAGTTCCCCGTTTTTCCGGCGGCGGCCAACCAGGTTTTGTACTTCGACGCTGTTCTTCGCGCCAGTTTGGGCGGTCCACGTGGCTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAGTGAGTTCCACGCGACGACGAGCGACTCCGACTCGTCCTCCGTGATCGATCTGAACCACAACGAAGGCGATGTTAAGGGGAACGGTTCTAGAATTTTCGATCTTGACCTTAACCACCCTCCTCCACAGGAGATGGCCTGA 660 0.6045 MAPRDKTTAVKVNTNGNAGVKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPFDNNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQQQFPVFPAAANQVLYFDAVLRASLGGPRGFGFGYNQHPVAASEFHATTSDSDSSSVIDLNHNEGDVKGNGSRIFDLDLNHPPPQEMA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02617 219 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Phac6g02617 219 MobiDBLite consensus disorder prediction 83 103 - -
Phac6g02617 219 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Phac6g02617 219 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Phac6g02617 219 MobiDBLite consensus disorder prediction 74 111 - -
Phac6g02617 219 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Phac6g02617 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 187 - -
Phac6g02617 219 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Phac6g02617 219 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Phac6g02617 219 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Phac6g02617 219 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Phac6g02617 219 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02617 Phac-Chr6 24130322 24132214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02617 21 156 AP2-EREBP Transcription Factor Family AT5G44210 52.817 8.10e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac6g02617 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02617 K09286 - gmx:100170742 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02617 6 24130322 24132214 Phac6g02617 6 24130322 24132214 ECH