Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02573 ATGCTCTCACCTTTTCCCATTTATTCCATTCATATATGCCAAGTCCAAAACCACTTCACACACCCTTCCATTCCTTCAAAAACCAAACACAAGCAGAGACTCACACAAACAAACATGGGAACCAACAAAAACTACCAAGAACAAACCAAGCTCTCCTTTTCCCAATCCCAAACAGAGTTCTTACCCTTCAACGAGAACGACTCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCACCACATTCCTCCCTCACCAAAGGCTCCACCAACCGCAATTCGCCCTCGACCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCTGAGATTCGCGACTCGGCACGCCACGGCGCCAGAATATGGCTCGGAACGTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCGGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTCAATTTCCCAGCCGAAATCGTGGCCGCAGCCACCGAGTTATCTTTCAATAATAACAACAACAACTACGATGCTGTTTCTGATTCTAGTGGTGGGAGCTCTTGCACCACCAATAATTCCACCCAGGTAAATGGGTCTCGGTCAGAAAGCACAAGTAGCACGAGTTAG 660 0.5091 MLSPFPIYSIHICQVQNHFTHPSIPSKTKHKQRLTQTNMGTNKNYQEQTKLSFSQSQTEFLPFNENDSQDMVIYQVLNEANALSTTFLPHQRLHQPQFALDPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAATELSFNNNNNNYDAVSDSSGGSSCTTNNSTQVNGSRSESTSSTS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02573 219 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Phac6g02573 219 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 FunFam Ethylene-responsive transcription factor 2 109 170 - -
Phac6g02573 219 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Phac6g02573 219 PANTHER DNA-BINDING DOMAIN 59 210 IPR044808 GO:0003700|GO:0009873
Phac6g02573 219 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Phac6g02573 219 MobiDBLite consensus disorder prediction 190 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02573 Phac-Chr6 23839605 23840720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02573 61 171 AP2-EREBP Transcription Factor Family AT5G47220 49.231 3.92e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phac6g02573 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02573 K13433 - gmx:100811533 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02573 6 23839605 23840720 Phac6g02573 6 23839605 23840720 ECH