Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02565 ATGCATTTCCTTTCAACTAATCCTCAAGCACAAACAATGACTTTGCTCATCTTTTATTTTCTCATGTCCCTTGTTCTTATTAAGGGCTACCAAGATGAAGCTACAAATGTACACAACCAAGTTATATCTGTTGGGGCAATCATAGATGTGAATTCTCGCATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCGAAGTTACAACAGCACTTCAAAGGCCTACAAGTTGGCTCTCTATTTTCGGAACTCCACCAAGGATCCCATCCGAGCCATCACTCTTGCTGAAGAGATGATTAATAAGCAAAAGGTGCAAGTGATTATTGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAACAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCAGAACCCACCATAACCCCACCGTTGATGACTAAGCGGTGGCCTTTTTTGGTGAGAATGACTAGAAGTGGTTTATCGTATATCAAATGCATTGCAGATATAGTGAAAGCTTTTGGATGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGATTATGGCATGCTAGCACTACTATCTGAGGCCCTCCAGAATGTGAGTTCATTGATTGATTATCACTTGGTTCTTCCACCTATTTCTTCTCTGCATGATCCAGGAGGGTTTATTCGTGAAGAGCTGTTGAAGTTGGTGCAAACCCAATCTCGCGTGTTCATTGTGCTACAATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGACTGGTGGACAAAGAATCAGCTTGGATACTCCCAGAGAGCATAACAAATTTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAGACGTACTACTCCGAAATAAGCAGTGAGTACCAAGATTTTGAGGCTCAATTCAGGAGAACATTTTGGTCTAAGAATGTGGAGGAAGATAACCTCTACCCCGGATTTTATGCATTGCAAGCATATGATAGCATTAAAATTGTGACCCAAGCAGTGGACAGAATGACCAGTAGAAACACTACCAGCCCAAAGAATTTACTACGAGAAATACTGTCTACCAGTTTTCTTGGTTTAAGCGGTCATATTCAATTTGAAGATGGGGCACTCCAGAAGACTTCTATTTTAAGGATAGTAAATGTGGCTGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTGAACAATATGGGTTCATCACAAACATCCCTACAGGAAAAGGTGGATATTCTGGTGCTGGTAATACAGAATGTTTCAGTGGTGTTCGGTGGCCTGGGAATGTGAAGCACTATCCAAAAGGGTGGAACATGCCTACTGCACAGAATCCAATGAAAATTGCAGTCCGCAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCATAATGGTAATCCTGCAAGTTTTAGTGGATTTTGTATTGACATTTTTAAGAGTGTGCACGACCTTTTGGGGTATGACTTGCCATATGAGTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGCAGTCGGGGACATGACAATACTAGAGGAAAGACTGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCATCGAAGTCTAAAGAGTCAGCATGGATGTTCACAAAGCCCTTTACCTGGGAACTGTGGCTGGTTACAGGTTCCATTTTGATTTACACAATGTTAGTAGTTTGGTACCTTGAGAGAGAATCCAATCCTGAATTTCATGGCAATTGGAAGACCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCATAGCAACTTAACTCGCATGGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTACCTCATGCTACACTGCCAGTCTTTCTTCAATGCTCACAGTTAAAAAACTGCAACCAAATGTCACAGATATTGAGTGGTTGAAGAGGAACAACATGAAAATTGGTTGTGATGGCGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAATGGTTCCATCCTGAGAACATAATCCATGTTACTGATGAATACAAGTATGATGATGCTTTTCAAAATAACACCATAGCAGCTGCCTTTCTTGAACTCCCATATGAAAAGGTATTCATTACTGAATACTGCGATAGATACACGGGTTCCACCCCCAGAACCAGATTTGGAGGACTGGGCTTTGTAAGTGATAATACTATTTCAGATTTTATGGATGTTTAG 2322 0.4109 MHFLSTNPQAQTMTLLIFYFLMSLVLIKGYQDEATNVHNQVISVGAIIDVNSRIGKEQQVAMDIAARSYNSTSKAYKLALYFRNSTKDPIRAITLAEEMINKQKVQVIIGMHRWSEAALVAETGSQAQVPIIAFAEPTITPPLMTKRWPFLVRMTRSGLSYIKCIADIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALQNVSSLIDYHLVLPPISSLHDPGGFIREELLKLVQTQSRVFIVLQSSLEMAIHLFKEASKMGLVDKESAWILPESITNLLDSVNKSAISYMDGALGIKTYYSEISSEYQDFEAQFRRTFWSKNVEEDNLYPGFYALQAYDSIKIVTQAVDRMTSRNTTSPKNLLREILSTSFLGLSGHIQFEDGALQKTSILRIVNVAGKSYKELCFWSEQYGFITNIPTGKGGYSGAGNTECFSGVRWPGNVKHYPKGWNMPTAQNPMKIAVRSRTSFSKFVKVDYDHNGNPASFSGFCIDIFKSVHDLLGYDLPYEYYPIDGTYNDLVQLVYNKSYDAAVGDMTILEERLQYVDFTVPYAESGLSMIVPSKSKESAWMFTKPFTWELWLVTGSILIYTMLVVWYLERESNPEFHGNWKTQISTALWFTFSSLFFAHREKMHSNLTRMVMVSWLLLVLILTSCYTASLSSMLTVKKLQPNVTDIEWLKRNNMKIGCDGDSFVRSFLEKVEWFHPENIIHVTDEYKYDDAFQNNTIAAAFLELPYEKVFITEYCDRYTGSTPRTRFGGLGFVSDNTISDFMDV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02565 773 Gene3D - 36 161 - -
Phac6g02565 773 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 762 IPR015683 -
Phac6g02565 773 Pfam Ligand-gated ion channel 576 690 IPR001320 GO:0015276|GO:0016020
Phac6g02565 773 Gene3D - 568 700 - -
Phac6g02565 773 Pfam Receptor family ligand binding region 59 396 IPR001828 -
Phac6g02565 773 SUPERFAMILY Periplasmic binding protein-like II 437 760 - -
Phac6g02565 773 SMART GluR_14 460 764 IPR001320 GO:0015276|GO:0016020
Phac6g02565 773 Gene3D - 162 338 - -
Phac6g02565 773 Gene3D - 458 567 - -
Phac6g02565 773 PIRSF IGluLR_plant 9 766 IPR017103 -
Phac6g02565 773 CDD PBP1_GABAb_receptor_plant 43 414 IPR044440 -
Phac6g02565 773 FunFam Glutamate receptor 161 329 - -
Phac6g02565 773 Gene3D - 339 457 - -
Phac6g02565 773 FunFam Glutamate receptor 568 698 - -
Phac6g02565 773 SUPERFAMILY Periplasmic binding protein-like I 38 450 IPR028082 -
Phac6g02565 773 FunFam Glutamate receptor 458 569 - -
Phac6g02565 773 Pfam Bacterial extracellular solute-binding proteins, family 3 484 733 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02565 Phac-Chr6 23800562 23804500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02565 7 762 Ion Channels AT2G29120 32.700 1.43e-130 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02565 - - gmx:100818619 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02565 6 23800562 23804500 Phac6g02565 6 23800562 23804500 ECH