Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02561 ATGGGCTCTAAGCATGACGAGGAATCACTTAGTGTAGGCCTAAAGTTGATGCTAGCAGCAGCTCTCTCTTTATTTAGTATGATCTTGTTCATCATCATCTTCCATTTTAGTGTCAAATATTTCATCAGACGCCAACAGAGGAGACGCCAAAACGACCTTCTTTACCAGATCACCACTCAAATAACACCAATTGATGTGAGTTCTGTGGAGCCATGCAACCCAGGACTGGAACCTTCGATCATAGCCTCTCTGCCTAAACTTTTGTACAGCCAAACGGAACAGTTCAAGAAAGGTGAAGTCATAGAGTGTTCGGTTTGCCTTGGCACTATTACAGAGGATGCAATTACTAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTCGATAAATGGTTTAGTTCTAACACCACATGCCCAATTTGCCGCACTGTGGCTGACCCAAAGGTGCCACCAGAAGAACATGATCATTTAGCCACAGGGGTCCACCAAGTCCAACCCACAGCACCACCTGCTGTGGGTGGTGATGAGGTAGAAGATGGTAATGAAATGGAGAAGGTGGGGTGTTCAGGTTTGAGAATAGGATCTTTCCATAGGATGGTTAGTAACAGGGAAAGATCAGGGAGGACTCAGAGTTGTGATGAATCTACAATAGATATAGGAAGACACTGA 678 0.441 MGSKHDEESLSVGLKLMLAAALSLFSMILFIIIFHFSVKYFIRRQQRRRQNDLLYQITTQITPIDVSSVEPCNPGLEPSIIASLPKLLYSQTEQFKKGEVIECSVCLGTITEDAITRVLPNCKHIFHVDCVDKWFSSNTTCPICRTVADPKVPPEEHDHLATGVHQVQPTAPPAVGGDEVEDGNEMEKVGCSGLRIGSFHRMVSNRERSGRTQSCDESTIDIGRH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02561 225 MobiDBLite consensus disorder prediction 204 225 - -
Phac6g02561 225 SUPERFAMILY RING/U-box 85 153 - -
Phac6g02561 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Phac6g02561 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 152 - -
Phac6g02561 225 Pfam Ring finger domain 102 145 IPR001841 -
Phac6g02561 225 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Phac6g02561 225 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02561 Phac-Chr6 23766917 23768022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02561 15 225 C3H Transcription Factor Family AT2G42360 30.876 3.55e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02561 K19038 - gmx:100786701 335.88