LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g02499	ATGGCCGACGTCGTTTCGAAGACCCCTCCCACCACCACCACCACCACCACCACGAGCCACCACAAGAAGGAGTCATCGAACCTCCTATTGGGTCGTTTCGAGATTGGGAAGCTCCTTGGTCATGGAACCTTCGCGAAGGTGTACTACGCGCGGAACCTGAAAACCAGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAAAAGATTCTGAAGGGAGGTTTGGTGGCACACATAAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGCCACCCCAACATCGTGCAACTCTTCGAAGTCATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGGGGCGAGCTTTTCAACAAGGTCGCAAAAGGAAGGCTCAAAGAAGAGGTTGCCAGGAAGTACTTTCAGCAGTTAATCTCCGCGGTGGGGTTCTGCCACGCCAGAGGGGTGTACCATAGAGATCTCAAACCTGAAAATCTCTTACTTGATGAGAATGGTAATCTTAAGGTGTCTGATTTCGGGTTGAGTGCGGTTTCTGATCAAATCCGACAGGATGGGTTGTTCCACACATTTTGTGGGACACCTGCGTATGTTGCTCCCGAGGTTTTGGCGAGGAAAGGATACGATGGTGCTAAGGTGGATCTCTGGTCTTGTGGGGTTGTGCTGTTTGTGTTGATGGCGGGGTATTTGCCCTTTCACGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACGAAGCTTCTTGACACAAAGCCTGAAACCCGGATTGCGATTCCTGAGATTATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATCAAGTTTTACGTTGAGGATGATAGGCTTTGCAATGTGGATGATGATGTGCTTTTGGACAACGATGACGATGTTGCTTCTGTTGCTTCTTTTTCGGATTACTCGATTTCGGAGTCTGATACGGAGGTTGATTTTAGGAGAAAGAATACTTCTTTGCCCAGACCTCCTAGTTTGAATGCTTTTGACATTATATCTTTTTCCCCTGGGTTTGATCTCTCTGGATTGTTTGAGGAGAAGGAGGATGAGACCAGGTTTGTGACTGCTGCACCAGTTAACATGATTATTTCCAAGTTGGAGGAGATTGCCCAGTTGGTCAGTTTTACAGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCCGAGAGGGGGTGAAGGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAGAGCTGAGTATGAGAGGTTTTGTAACAATGAATTGAAGCCTGGGCTGCAGAATTTGATGGTGGAGGAGTCTTCGACTTCTTCAGGCTTGTCTACACCTCAAACTTCCTTACTAGGTGGCCTTTCTGAATCTGTTCCGGACATTTCTTCTGAAATCGGAAGCCCATGCTATGTACCTTCTGATGAGTGA	1527	0.4813	MADVVSKTPPTTTTTTTTSHHKKESSNLLLGRFEIGKLLGHGTFAKVYYARNLKTSEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTKLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDDVLLDNDDDVASVASFSDYSISESDTEVDFRRKNTSLPRPPSLNAFDIISFSPGFDLSGLFEEKEDETRFVTAAPVNMIISKLEEIAQLVSFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMVEESSTSSGLSTPQTSLLGGLSESVPDISSEIGSPCYVPSDE*	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g02499	508	FunFam	Non-specific serine/threonine protein kinase	23	331	-	-
	Phac6g02499	508	Pfam	Protein kinase domain	33	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02499	508	ProSiteProfiles	NAF domain profile.	346	370	IPR018451	GO:0007165
	Phac6g02499	508	ProSiteProfiles	Protein kinase domain profile.	33	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02499	508	Gene3D	Kinase associated domain 1, KA1	346	467	-	-
	Phac6g02499	508	SMART	serkin_6	33	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02499	508	CDD	STKc_SnRK3	32	286	-	-
	Phac6g02499	508	MobiDBLite	consensus disorder prediction	1	21	-	-
	Phac6g02499	508	Gene3D	Transferase(Phosphotransferase) domain 1	23	341	-	-
	Phac6g02499	508	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	23	460	-	-
	Phac6g02499	508	CDD	CIPK_C	352	463	-	-
	Phac6g02499	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Phac6g02499	508	Pfam	NAF domain	348	404	IPR004041	GO:0007165
	Phac6g02499	508	MobiDBLite	consensus disorder prediction	488	508	-	-
	Phac6g02499	508	ProSitePatterns	Protein kinases ATP-binding region signature.	39	62	IPR017441	GO:0005524
	Phac6g02499	508	FunFam	Non-specific serine/threonine protein kinase	24	112	-	-
	Phac6g02499	508	FunFam	Non-specific serine/threonine protein kinase	348	466	-	-
	Phac6g02499	508	SUPERFAMILY	Protein kinase-like (PK-like)	29	288	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g02499	Phac-Chr6	23404560	23406722	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g02499	15	469	CBL-interacting serine-threonine protein kinases	AT4G18700	81.004	0.0	756

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Phac6g02499		Pkinase	6.5e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g02499	-		-	gmx:100790133	867.84