LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g02494	ATGGAAGATGCCAAAGTGGGTGCTTGTCTAGTTTCCCTCTTTCTGTGCTACTGGGTGCTTCTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGGTTTGGCATTTCTTCCTTTTCTTTGTTTCTCATATTCTAACTTTGTTTCAGTGAGAGATAGTTTTGTTTGGTTGTTATTAGTGGCTGCTTTGATGTCCTTGAAGAGTAAGATGTATGGTGAGTTTCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGCACTTGGTATATGGTTGGTTGCTCTGCCGAGGGCTATGTCGTTTCCCTGGAAATGGCCAGTGCGGGTTTATCCGGAACTATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCATACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATTCCAACTGAGATAGGAAAGCTGTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTTGATGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACTGAACTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCGAAAGGTTATAGTATTTCAGGAAACAGCTTCCTCTGCACCTCTCCCTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCATAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTCTTTTGGTTGCATTGGTACAGATCAAACATTCTCTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTTCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCCGTGCATCGAAACCTCTTGCGTCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGCGAAAAGCCGTCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGGCAGCACGCGGGCTTCTATACCTGCATGAACAATGCAATCCAAAAATAATCCATAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTCCGAGGTACAGTGGGTCACATTGCTCCAGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGAATATTACTTTTGGAGCTCATAACAGGACACAAGGCACTTGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATCTGAGGAGAAGCGGCTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAAGCAGTGGATTTGTCTCTGCAGTGTACTCAGTCACTTCCCACTTTAAGGCCGAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTAGGGCAGTTAGTGCGGGCAGAGGAGTCACAAGGGGGGACTAACCTATATGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA	1944	0.4285	MEDAKVGACLVSLFLCYWVLLVEGTDSLLSPKGVNYEGLAFLPFLCFSYSNFVSVRDSFVWLLLVAALMSLKSKMYGEFHVMDGWDINSVDPCTWYMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTELSFLDLSFNNLSGPTPKILAKGYSISGNSFLCTSPSQICMGFSKPVNDTGSSQSTGGHHHRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLSEEKRLEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQLVRAEESQGGTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR*	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g02494	647	ProSiteProfiles	Leucine-rich repeat profile.	153	176	IPR001611	GO:0005515
	Phac6g02494	647	FunFam	Somatic embryogenesis receptor-like kinase 1	400	614	-	-
	Phac6g02494	647	Gene3D	Transferase(Phosphotransferase) domain 1	400	606	-	-
	Phac6g02494	647	PRINTS	Leucine-rich repeat signature	199	212	-	-
	Phac6g02494	647	PRINTS	Leucine-rich repeat signature	154	167	-	-
	Phac6g02494	647	Pfam	Protein kinase domain	325	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02494	647	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	44	595	-	-
	Phac6g02494	647	Pfam	Leucine rich repeat N-terminal domain	66	101	IPR013210	-
	Phac6g02494	647	FunFam	Probable leucine-rich repeat receptor-like protein kinase At2g33170	65	215	-	-
	Phac6g02494	647	SUPERFAMILY	Protein kinase-like (PK-like)	308	602	IPR011009	-
	Phac6g02494	647	FunFam	Somatic embryogenesis receptor kinase 1	294	399	-	-
	Phac6g02494	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Phac6g02494	647	ProSitePatterns	Protein kinases ATP-binding region signature.	330	352	IPR017441	GO:0005524
	Phac6g02494	647	Gene3D	Phosphorylase Kinase; domain 1	294	399	-	-
	Phac6g02494	647	Gene3D	Ribonuclease Inhibitor	65	241	IPR032675	-
	Phac6g02494	647	ProSiteProfiles	Protein kinase domain profile.	324	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02494	647	SMART	serkin_6	324	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac6g02494	647	SUPERFAMILY	L domain-like	65	237	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g02494	Phac-Chr6	23369683	23374843	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g02494	69	647	Receptor kinase-like Gene Family	AT5G45780	71.773	0.0	821

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Phac6g02494		Pkinase	4.5e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g02494	-		-	ccaj:109812711	1155.97