Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02493 ATGGAAGATGCCAAAGTGGGTGCTTGTCTAGTTTCCCTCTTTCTGTGCTACTGGGTGCTTCTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCTTGAAGAGTAAGATGTATGGTGAGTTTCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGCACTTGGTATATGGTTGGTTGCTCTGCCGAGGGCTATGTCGTTTCCCTGGAAATGGCCAGTGCGGGTTTATCCGGAACTATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCATACATTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACTGAACTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCGAAAGGTTATAGTATTTCAGGAAACAGCTTCCTCTGCACCTCTCCCTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCATAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTCTTTTGGTTGCATTGGTACAGATCAAACATTCTCTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTTCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCCGTGCATCGAAACCTCTTGCGTCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGCGAAAAGCCGTCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGGCAGCACGCGGGCTTCTATACCTGCATGAACAATGCAATCCAAAAATAATCCATAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTCCGAGGTACAGTGGGTCACATTGCTCCAGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGAATATTACTTTTGGAGCTCATAACAGGACACAAGGCACTTGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATCTGAGGAGAAGCGGCTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAAGCAGTGGATTTGTCTCTGCAGTGTACTCAGTCACTTCCCACTTTAAGGCCGAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTAGGGCAGTTAGTGCGGGCAGAGGAGTCACAAGGGGGGACTAACCTATATGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1719 0.4375 MEDAKVGACLVSLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSLKSKMYGEFHVMDGWDINSVDPCTWYMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLRLSKNKLSGQIPQLVANLTELSFLDLSFNNLSGPTPKILAKGYSISGNSFLCTSPSQICMGFSKPVNDTGSSQSTGGHHHRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLSEEKRLEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQLVRAEESQGGTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02493 572 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Phac6g02493 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Phac6g02493 572 Gene3D Phosphorylase Kinase; domain 1 219 324 - -
Phac6g02493 572 Gene3D Transferase(Phosphotransferase) domain 1 325 531 - -
Phac6g02493 572 Gene3D Ribonuclease Inhibitor 33 166 IPR032675 -
Phac6g02493 572 SMART serkin_6 249 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g02493 572 FunFam Leucine-rich repeat receptor-like kinase 36 160 - -
Phac6g02493 572 SUPERFAMILY L domain-like 36 147 - -
Phac6g02493 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 520 - -
Phac6g02493 572 ProSiteProfiles Protein kinase domain profile. 249 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g02493 572 SUPERFAMILY Protein kinase-like (PK-like) 233 527 IPR011009 -
Phac6g02493 572 Pfam Protein kinase domain 250 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g02493 572 FunFam Somatic embryogenesis receptor-like kinase 1 325 539 - -
Phac6g02493 572 FunFam Somatic embryogenesis receptor kinase 1 219 324 - -
Phac6g02493 572 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02493 Phac-Chr6 23369683 23374843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02493 42 572 Receptor kinase-like Gene Family AT5G45780 65.060 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phac6g02493 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02493 - - ccaj:109812711 1031.55