Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02454 ATGATGGAGGAAGCTCAGGGCAATTCTAGTTCCTTGCCTCCTTTCCTCAGCAAGACTTATGACATGGTTGATGATCCTTCAACCAATTCCATTGTTTCCTGGAGTGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAAGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCAAACGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGCAAACCTGTTCATAGCCATTCTTTGCAGAATATTCAGGTTCAGGGGTCTTCTCCACTGACAAAATCAGAAAGGCAGAGTTTCAAGGATGAGATACGGAAGCTTAAAGATGAAAAAGATCAAATTCTCCGGGAGTTGGAGAGGCATGAACAGGAGTGGAGAATGTATGAGGTACAACTACAATACTCAAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCACTGACAGAAAACGGGGATAGAAAACGTAGGTTGCCAAGAAGTGGTCTCTTCAGTGATGATGCTAGTATTGAAGATCATATGGAAACTTCCTCTGTATCACCTGGGGTAAATGCTGAGGGTGCCTCTATTTTCGCACCGAACATGGAGCGATTTGATATTCTCGAGTCATCCATTATGTTTTGGGAGAATATTGCACATGATGTTCAAAGTCATGTGAACATGGATTTGGATGAAACAACAAGTTGTGCAGATAGTCCAGCTATATCTTCTGTCCAGCTGGAGGTTGAAGTTCAGCCTAAATCACCTGGAATCAACGTGAATTCTGAGTCAGCTGTAGCGGCTGTTCCTGATCTTGATGCATCAAAAGAGTCACCAGTGGGAACAGTTCCTGTGGCTACTGGTGTTAATGATATATTCTGGGAACGGTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGCAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.422 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSKDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQVQGSSPLTKSERQSFKDEIRKLKDEKDQILRELERHEQEWRMYEVQLQYSNDRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTENGDRKRRLPRSGLFSDDASIEDHMETSSVSPGVNAEGASIFAPNMERFDILESSIMFWENIAHDVQSHVNMDLDETTSCADSPAISSVQLEVEVQPKSPGINVNSESAVAAVPDLDASKESPVGTVPVATGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNAKFWWNIRNVNNPPEQMGHS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02454 386 Coils Coil 128 162 - -
Phac6g02454 386 MobiDBLite consensus disorder prediction 351 365 - -
Phac6g02454 386 Coils Coil 170 190 - -
Phac6g02454 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac6g02454 386 MobiDBLite consensus disorder prediction 209 225 - -
Phac6g02454 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Phac6g02454 386 Gene3D - 7 105 IPR036388 -
Phac6g02454 386 FunFam Heat shock transcription factor 1 8 105 - -
Phac6g02454 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 233 IPR027725 -
Phac6g02454 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac6g02454 386 MobiDBLite consensus disorder prediction 348 386 - -
Phac6g02454 386 MobiDBLite consensus disorder prediction 368 386 - -
Phac6g02454 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac6g02454 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac6g02454 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac6g02454 386 MobiDBLite consensus disorder prediction 209 234 - -
Phac6g02454 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02454 Phac-Chr6 23172488 23175309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02454 9 385 HSF AT4G18880 50.754 3.30e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac6g02454 HSF_DNA-bind 4.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02454 K09419 - gmx:100784280 653.669