Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02439 ATGTCGGTGGTGGCTGATAATTCAGTAAGCAGTGGAAACCACCAGGTGGCTTTAAATGTGACCGGTGATACGCCCAAAAAGTGTGATCATTCAGCCAACCAAGACTGTGTACCTCTTCTGCAGAAGTTGATAGCAGAGGTGGTGGGGACGTACTTTTTGATATTTGCAGGATGTGCTTCGGTGGTTGTGAACCTTGACAAGGACAAAGTGATAACACAACCTGGGATTTCAATTGTTTGGGGGCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACTATTGCTCATGCTTCCACCAAAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTAGCTAGTGGAACTCTCAGACTTATATTCAATGGCAAGAATGACCATTTCGCAGGAACACTCCCGGCTGGTTCTGACTTGCAATCTTTTGTGGTGGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTACTAAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCTGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCAGGTGCATGGGCCTACAATTTCATAAGATACACAAACAAACCAGTGCGTGAAATTACCAAGAGTGCCTCTTTCCTCAAAGGTGCTCCAGCCGAATGA 822 0.4599 MSVVADNSVSSGNHQVALNVTGDTPKKCDHSANQDCVPLLQKLIAEVVGTYFLIFAGCASVVVNLDKDKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGKNDHFAGTLPAGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSPTLGAVAGAWAYNFIRYTNKPVREITKSASFLKGAPAE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02439 273 Gene3D Glycerol uptake facilitator protein. 5 263 IPR023271 -
Phac6g02439 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Phac6g02439 273 PANTHER AQUAPORIN NIP2-1 23 267 IPR034294 -
Phac6g02439 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Phac6g02439 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac6g02439 273 FunFam Aquaporin NIP1-1 2 260 - -
Phac6g02439 273 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02439 Phac-Chr6 23086814 23089739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02439 37 268 Major Intrinsic Protein MIP AT5G37820 63.793 3.48e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02439 K09874 - gmx:100812577 514.227