Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02402 ATGGTGACAGGAGAAAGACAAGCCCCCAGGATTCGCAGTTTGTACTTGAAAACTATACTGAAGCAGGACATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTAATAGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTTGCTGTTATTTTGCTCTCATGTATACCATGTGTTGTTGTTACTGGTGGAATTCTATCCATGTTGATGACTAAAATGTCAAGTCGGGGGCAAGCTGCTTATTCAGAAGCAGGAACTGTGGCTGAACAAACAGTGGGAGCTATCAGAACAGTGGCCTCTTTCACTGGTGAGAGAAAAGCAATAGAAAAGTATAATATCAAGTTAAAGGTTGCTTATAGAACTATGGTTCTACAAGGGATGGCCTCGGGGTTTGGACTGGGAGTACTTATGTTGATTATCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATACAATGGTGGAACCGTCATCACTGTAATAGTAGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTTGCCTAAATGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAGCGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCGGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTATATGTCCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAACGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTGTCAATTTGAAGAATTTTCAGGTTAGATGGATAAGAGAACAAATTGGGTTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATAAAATCAGCAATAACACTTGCCAATGCCAAAACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGACAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCTGAACGTGTTGTTCAAGAAGCATTAGAACAAGCAATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATTAGAAATGCTGACACCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGGAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAATGTTAATTTAGATAGTAACATAGCCAGATCTTCCACCCAGAGAGAAGTTTCCTTAAGCAGAGGTTCATCAAGTAGACACTCCCAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAATAGAAGATGGGGATGTTGAAAAAAGTAAAGTTGATACTAAGAAGCCCAATAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTTTGTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAGAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATCTGGGTTTGGGTTTAGTTACTCTTGTGGTCATACCAATGCAAAATTACTTCTTTGGCGTTGCTGGTGGAAAATTAGTAGAAAGAATTCGTTCACTGACATTTGAAAGGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCAGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTGGCCCTTATTGTGCAAAACTTATCAACAATCATTGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTATTCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTCAGGTGGCCAATGAAGCTGTTGGTAGCATCAGAACTATCGCATCATTTTGTGCCGAATCGAAGGTGATGGATATGTACCGGAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGCTGCAGGATTTGGTTTCTCTTTTCTGGTTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGACTAACAACTTTTGCAGAAGTTTTCAAGGTCTTCTTTTGTTTAACAATCACAGCACTCGGCATTTCCCAGACTAGTGCCTTGGCTCCAGACACCAACAAAGCCAAAGATTCCGCAGCTTCAATATTTAACATTCTAGACAGCACGCCTACCATTGACTCCAGCAACACTGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGAACTTCAACATGTCTGTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCCGGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGTCTCTTAGAGAGATTTTACAACCCTCATACTGGACGTATACTACTTGATGGAGTGGATATAAAAGAGTTCAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCTAAAGCGTCCAATGCACATCAATTCATAAGTGCTCTCCCCGAAGGCTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAACAGCGGATAGCCATTGCCAGAGCCATGCTGAAAGACCCCAAAATCCTCTTGCTTGATGAGGCAACCAGTGCACTTGATGCTGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACTGTAGTAGTAGCTCACCGTCTTACAACGATTAGAGGTGCTGACATGATAGCTGTAATGAAAAATGGAGCGGTTGCTGAAAAGGGAAGACATGATGAGTTGATGAAGATTATTGATGGAGTCTATGCATCATTGGTTGCTCTACACATGAGTGCATCGTAA 3483 0.4175 MVTGERQAPRIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWQLAVILLSCIPCVVVTGGILSMLMTKMSSRGQAAYSEAGTVAEQTVGAIRTVASFTGERKAIEKYNIKLKVAYRTMVLQGMASGFGLGVLMLIIFCTYALAMWYGSKLVIEKGYNGGTVITVIVALMTGGMSLGQTSPCLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVMEDIRGDIELRDVYFSYPARKNVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEEGTHDELIKDVDGAYSQLIRLQEGAKEAEGSHNSEAEKSSNNVNLDSNIARSSTQREVSLSRGSSSRHSQSHSFALSHRSGVHESVEIEDGDVEKSKVDTKKPNKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPLFGFLFSSAITMFFEPPEKQRKDSRFWALLYLGLGLVTLVVIPMQNYFFGVAGGKLVERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLIQGFLQMKFLKGFSADAKVKYEEASQVANEAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSAAGFGFSFLVLYCTNAFCFYIGSVLVQHGLTTFAEVFKVFFCLTITALGISQTSALAPDTNKAKDSAASIFNILDSTPTIDSSNTEGRTLEAIAGDIELQHVCFNYPTRPHIQIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPHTGRILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFISALPEGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADMIAVMKNGAVAEKGRHDELMKIIDGVYASLVALHMSAS* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02402 1160 Gene3D ABC transporter type 1, transmembrane domain 2 513 IPR036640 GO:0005524|GO:0016020
Phac6g02402 1160 Pfam ABC transporter 936 1085 IPR003439 GO:0005524
Phac6g02402 1160 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 218 - -
Phac6g02402 1160 ProSitePatterns ABC transporters family signature. 1057 1071 IPR017871 GO:0005524|GO:0016887
Phac6g02402 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1155 IPR027417 -
Phac6g02402 1160 CDD ABC_6TM_Pgp_ABCB1_D2_like 585 900 - -
Phac6g02402 1160 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 596 882 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02402 1160 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 917 1154 IPR003439 GO:0005524
Phac6g02402 1160 Pfam ABC transporter transmembrane region 596 867 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02402 1160 Pfam ABC transporter transmembrane region 2 206 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02402 1160 MobiDBLite consensus disorder prediction 508 551 - -
Phac6g02402 1160 SUPERFAMILY ABC transporter transmembrane region 576 898 IPR036640 GO:0005524|GO:0016020
Phac6g02402 1160 SUPERFAMILY ABC transporter transmembrane region 3 241 IPR036640 GO:0005524|GO:0016020
Phac6g02402 1160 FunFam ABC transporter B family member 1 247 496 - -
Phac6g02402 1160 CDD ABC_MTABC3_MDL1_MDL2 257 495 - -
Phac6g02402 1160 Gene3D ABC transporter type 1, transmembrane domain 575 883 IPR036640 GO:0005524|GO:0016020
Phac6g02402 1160 Gene3D ABC transporter type 1, transmembrane domain 884 906 IPR036640 GO:0005524|GO:0016020
Phac6g02402 1160 FunFam ABC transporter B family member 1 907 1157 - -
Phac6g02402 1160 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 257 493 IPR003439 GO:0005524
Phac6g02402 1160 CDD ABC_MTABC3_MDL1_MDL2 917 1153 - -
Phac6g02402 1160 Gene3D - 907 1156 IPR027417 -
Phac6g02402 1160 Gene3D - 553 574 IPR027417 -
Phac6g02402 1160 Gene3D - 247 496 IPR027417 -
Phac6g02402 1160 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02402 1160 MobiDBLite consensus disorder prediction 555 571 - -
Phac6g02402 1160 MobiDBLite consensus disorder prediction 497 571 - -
Phac6g02402 1160 PANTHER ABC TRANSPORTER B FAMILY 1 503 IPR039421 -
Phac6g02402 1160 ProSitePatterns ABC transporters family signature. 396 410 IPR017871 GO:0005524|GO:0016887
Phac6g02402 1160 Pfam ABC transporter 277 424 IPR003439 GO:0005524
Phac6g02402 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 495 IPR027417 -
Phac6g02402 1160 SMART AAA_5 944 1131 IPR003593 GO:0016887
Phac6g02402 1160 SMART AAA_5 284 470 IPR003593 GO:0016887
Phac6g02402 1160 FunFam ABC transporter B family member 1 575 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02402 Phac-Chr6 22783284 22789132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02402 574 1159 Calmodulin-binding Proteins AT2G36910 41.443 2.10e-139 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02402 K05658 - gmx:100801771 1957.96