Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02400 ATGTCACCCAACACCGAAGTGCCAACTTCTTCTACGTCTACTCAACATCATGAAAAAGAAGAAAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTCTTCACTTTTGCAGATCGTCTTGACGTTGCCTTGATGACCATTGGCACGATCTGTGCCATGGCTAATGGCTGGTCGCAGCCTATCATGACTCTCATTTTAGGAAAGCTTATCAACACCTTTGGCTCCACTGATCCATCAAATACCATCAAAGAAGTTTCTAAGGTTTCATTATTATTTGTATACCTGGCTATTGCGACTGGAGTTGTCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGAGAAAGACAAGCCCCCAGGATTCGCAGTTTGTACTTGAAAACTATACTGAAGCAGGACATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTAATAGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTTGCTGTTATTTTGCTCTCATGTATACCATGTGTTGTTGTTACTGGTGGAATTCTATCCATGTTGATGACTAAAATGTCAAGTCGGGGGCAAGCTGCTTATTCAGAAGCAGGAACTGTGGCTGAACAAACAGTGGGAGCTATCAGAACAGTGGCCTCTTTCACTGGTGAGAGAAAAGCAATAGAAAAGTATAATATCAAGTTAAAGGTTGCTTATAGAACTATGGTTCTACAAGGGATGGCCTCGGGGTTTGGACTGGGAGTACTTATGTTGATTATCTTCTGCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATACAATGGTGGAACCGTCATCACTGTAATAGTAGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTTGCCTAAATGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAGCGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCGGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTATATGTCCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAACGATTCTATGATCCTGATGCTGGAGAAGTACTCATAGATGGTGTCAATTTGAAGAATTTTCAGGTTAGATGGATAAGAGAACAAATTGGGTTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATAAAATCAGCAATAACACTTGCCAATGCCAAAACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGACAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCTGAACGTGTTGTTCAAGAAGCATTAGAACAAGCAATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATTAGAAATGCTGACACCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGGAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAATGTTAATTTAGATAGTAACATAGCCAGATCTTCCACCCAGAGAGAAGTTTCCTTAAGCAGAGGTTCATCAAGTAGACACTCCCAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAATAGAAGATGGGGATGTTGAAAAAAGTAAAGTTGATACTAAGAAGCCCAATAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTTTGTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAGAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATCTGGGTTTGGGTTTAGTTACTCTTGTGGTCATACCAATGCAAAATTACTTCTTTGGCGTTGCTGGTGGAAAATTAGTAGAAAGAATTCGTTCACTGACATTTGAAAGGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCAGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTGGCCCTTATTGTGCAAAACTTATCAACAATCATTGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTATTCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTCAGGTGGCCAATGAAGCTGTTGGTAGCATCAGAACTATCGCATCATTTTGTGCCGAATCGAAGGTGATGGATATGTACCGGAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGCTGCAGGATTTGGTTTCTCTTTTCTGGTTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACATGGACTAACAACTTTTGCAGAAGTTTTCAAGGTCTTCTTTTGTTTAACAATCACAGCACTCGGCATTTCCCAGACTAGTGCCTTGGCTCCAGACACCAACAAAGCCAAAGATTCCGCAGCTTCAATATTTAACATTCTAGACAGCACGCCTACCATTGACTCCAGCAACACTGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGAACTTCAACATGTCTGTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCCGGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGTCTCTTAGAGAGATTTTACAACCCTCATACTGGACGTATACTACTTGATGGAGTGGATATAAAAGAGTTCAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCTAAAGCGTCCAATGCACATCAATTCATAAGTGCTCTCCCCGAAGGCTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAACAGCGGATAGCCATTGCCAGAGCCATGCTGAAAGACCCCAAAATCCTCTTGCTTGATGAGGCAACCAGTGCACTTGATGCTGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACTGTAGTAGTAGCTCACCGTCTTACAACGATTAGAGGTGCTGACATGATAGCTGTAATGAAAAATGGAGCGGTTGCTGAAAAGGGAAGACATGATGAGTTGATGAAGATTATTGATGGAGTCTATGCATCATTGGTTGCTCTACACATGAGTGCATCGTAA 3810 0.4189 MSPNTEVPTSSTSTQHHEKEEKANQKVPFYKLFTFADRLDVALMTIGTICAMANGWSQPIMTLILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVVSFLQVACWMVTGERQAPRIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWQLAVILLSCIPCVVVTGGILSMLMTKMSSRGQAAYSEAGTVAEQTVGAIRTVASFTGERKAIEKYNIKLKVAYRTMVLQGMASGFGLGVLMLIIFCTYALAMWYGSKLVIEKGYNGGTVITVIVALMTGGMSLGQTSPCLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVMEDIRGDIELRDVYFSYPARKNVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEEGTHDELIKDVDGAYSQLIRLQEGAKEAEGSHNSEAEKSSNNVNLDSNIARSSTQREVSLSRGSSSRHSQSHSFALSHRSGVHESVEIEDGDVEKSKVDTKKPNKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPLFGFLFSSAITMFFEPPEKQRKDSRFWALLYLGLGLVTLVVIPMQNYFFGVAGGKLVERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLIQGFLQMKFLKGFSADAKVKYEEASQVANEAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSAAGFGFSFLVLYCTNAFCFYIGSVLVQHGLTTFAEVFKVFFCLTITALGISQTSALAPDTNKAKDSAASIFNILDSTPTIDSSNTEGRTLEAIAGDIELQHVCFNYPTRPHIQIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPHTGRILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFISALPEGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADMIAVMKNGAVAEKGRHDELMKIIDGVYASLVALHMSAS* 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02400 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Phac6g02400 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1264 IPR027417 -
Phac6g02400 1269 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02400 1269 Pfam ABC transporter transmembrane region 44 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02400 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Phac6g02400 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02400 1269 SUPERFAMILY ABC transporter transmembrane region 685 1007 IPR036640 GO:0005524|GO:0016020
Phac6g02400 1269 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Phac6g02400 1269 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Phac6g02400 1269 Pfam ABC transporter 1045 1194 IPR003439 GO:0005524
Phac6g02400 1269 Gene3D - 364 632 IPR027417 -
Phac6g02400 1269 SMART AAA_5 393 579 IPR003593 GO:0016887
Phac6g02400 1269 SMART AAA_5 1053 1240 IPR003593 GO:0016887
Phac6g02400 1269 MobiDBLite consensus disorder prediction 617 660 - -
Phac6g02400 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Phac6g02400 1269 MobiDBLite consensus disorder prediction 664 680 - -
Phac6g02400 1269 MobiDBLite consensus disorder prediction 606 680 - -
Phac6g02400 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 327 - -
Phac6g02400 1269 FunFam ABC transporter B family member 1 684 992 - -
Phac6g02400 1269 CDD ABC_MTABC3_MDL1_MDL2 1026 1262 - -
Phac6g02400 1269 FunFam ABC transporter B family member 1 1016 1266 - -
Phac6g02400 1269 FunFam ABC transporter B family member 9 31 361 - -
Phac6g02400 1269 PANTHER ABC TRANSPORTER B FAMILY 6 612 IPR039421 -
Phac6g02400 1269 MobiDBLite consensus disorder prediction 1 22 - -
Phac6g02400 1269 FunFam ABC transporter B family member 1 356 605 - -
Phac6g02400 1269 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Phac6g02400 1269 SUPERFAMILY ABC transporter transmembrane region 26 350 IPR036640 GO:0005524|GO:0016020
Phac6g02400 1269 Gene3D ABC transporter type 1, transmembrane domain 90 1000 IPR036640 GO:0005524|GO:0016020
Phac6g02400 1269 Gene3D - 1016 1268 IPR027417 -
Phac6g02400 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac6g02400 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 604 IPR027417 -
Phac6g02400 1269 Pfam ABC transporter 386 533 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02400 Phac-Chr6 22783284 22789132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02400 18 1265 Calmodulin-binding Proteins AT2G36910 44.462 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02400 K05658 - gmx:100801771 2124.36