Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02389 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTCTCGACGAACAAGGAAATAGATGCTCATATCCCAAACTACCCAAGCTTACCTCCTCAACTCATTTGTCAACTTCATAACATGACCATGCATGCTGATGCAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGTACTCCTAGTAAACAGCCAACGAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGCCGTGCTGCTGAAAAAGTGTTCCCTGCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCACGGTAATGAGTGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATATGGAATGAAAAGAACCAACTTCTTCTTGGCATCCGTCGTGCTAATCGGCCACAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAGTACGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTTAGGATGCTGTTTGAAACTGAGGAATCAGGTGTACGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGTTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTTTATGGGAAATTGAGCCATTAACTACTTTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCGCCAGGACTGCCTTCATTCCACGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGAGGGCTGCAGTCTCCTACTTTTCAGGGGATAGGTGTTAATCCCTGGATGCAGCCTAGATTTGATCCCTCCATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCCATACTTCAATTTCAGCAACCGCAGAACTTCCCAAACAGGACAGCTGCCTTTGTGCAGGCCCAGATGTTGCAGCAGACACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCCGCATTCACCACAATCTCATCTGCAAACTCAGGCTCATCTTCAGCAACAATTACAACATCAGCACTCATTCAATAGTCAGAATCATCATCAGCACCAGCAACAACAACTACGACAGACACAGCAGCAACAGCAACAAGTTGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATGGGAACTCTGTGCCTACTATTGTTTCTCCCCTGCACAGTATCCTGGGTTCATTTCCGCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCATCTGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTATTTCTTCCGGAGTCTCCCAATGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTACCGCGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAATGCTCCATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCCTATTTGGTGTTAATATAGATCCCTCATCCCTTCTCATGCCTAATGGAATGTCAAACCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACCACCACAGGCACTGATTCTTCATTGAACCATGGAATAACACCCAGTATTGGCGGTGAAGCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACAAAGTTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCTGGTCTTGAACTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCCCTGGAATAACAGCTGTCGGGTCTTTAGACTACTGA 2718 0.461 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEIDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAAAVQEMRGLDPSKQHSASILQFQQPQNFPNRTAAFVQAQMLQQTQHQQIFGNNQENPHSPQSHLQTQAHLQQQLQHQHSFNSQNHHQHQQQQLRQTQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDGNSVPTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLISSGVSQCVLPQVEQLGQPQSTASQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSNLKGVSSNNDSSTLPYQSSNYLNTTTGTDSSLNHGITPSIGGEAGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSPGITAVGSLDY* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02389 905 Pfam AUX/IAA family 765 857 IPR033389 -
Phac6g02389 905 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Phac6g02389 905 FunFam Auxin response factor 291 363 - -
Phac6g02389 905 Gene3D - 125 228 IPR015300 -
Phac6g02389 905 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phac6g02389 905 FunFam Auxin response factor 125 229 - -
Phac6g02389 905 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac6g02389 905 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Phac6g02389 905 Gene3D - 769 861 - -
Phac6g02389 905 FunFam Auxin response factor 768 861 - -
Phac6g02389 905 ProSiteProfiles PB1 domain profile. 772 856 IPR000270 GO:0005515
Phac6g02389 905 Gene3D - 291 363 - -
Phac6g02389 905 SUPERFAMILY CAD & PB1 domains 771 847 - -
Phac6g02389 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 861 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac6g02389 905 SMART B3_2 127 229 IPR003340 GO:0003677
Phac6g02389 905 CDD B3_DNA 126 227 IPR003340 GO:0003677
Phac6g02389 905 MobiDBLite consensus disorder prediction 494 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02389 Phac-Chr6 22741916 22749453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02389 1 483 B3 DNA Binding Superfamily AT1G30330 85.451 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac6g02389 B3 1.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02389 - - gmx:100798719 1568.13