Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02305 ATGGCGAGACCTTCCAAGCCTCACTCATCTTCCGACGAAGCGCTCTCCAATGCTTCAAGTTCGTCGGAGGAAAAGGAGCTGGTCAACGAACAGATCAACGAAGAGGAAGACGAGGAGGAACTCGAGGCGGTGGCACGCTCTGCCAGTTCCGACGAGGATGACGATGAAGGTGCCGCTGGTAATCCTCCGGATTCCGACGAAGATCCCGCCGCCGATGATGACCAGGGCGAGGACAATGTTGATCCTGCAATTAGCAAGAGAGAGAAGGATAGATTAAAGGAAATGCAAAAATTGAAGAAACAGAAAATCCAGGAGATACTGGATGAACAAAATGCAGCCATAGATGCTGATATGAACAACAGAGGAAAGGGGCGTCTTAAGTATCTCTTGCAGCAGACTGAACTGTTTGCTCATTTTGCAAAAGGTGATCAGACTTCTTCTCAGAAGTCAAGGGGAAGGGGTCGCCATGCATCAAAAGTTACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAGCACACGCCTCGTGACACAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTATTAGGTTACTTGCATGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAGTCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAAAGAGGAACTTCTGGTTGCTGGGAGGTTTGATGTCTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCCTGCTGTCGAAAACAATGAGACTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTCGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTTCGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCTAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAACGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCGGCCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCCAGGGTCCTTATATTTTCTCAGATGACAAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGTGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTATTATCTACTCGCGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTACAAGTTTTCCGATTTTGTACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTGGCACTGGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAACTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAGAGGTTGAGTGAACTGTATGAAAAGGAAGTTCGCTATCTCATGCAAGCACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTAACCGCTGAAGAATTGGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCTTGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTAAAGGCGGCATTTCGAACTTCACCCTTGTTTAGATTTGATTGGTTTGTTAAGTCACGCACAACTCAGGAACTGGCGAGAAGGTGTGACACCCTCATTCGTCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTTGAAGAAGCGGAAGCAGTTAACCATGGATGATTACGCAAGCACGGGGAAGAGAAGAAAATAA 3204 0.4201 MARPSKPHSSSDEALSNASSSSEEKELVNEQINEEEDEEELEAVARSASSDEDDDEGAAGNPPDSDEDPAADDDQGEDNVDPAISKREKDRLKEMQKLKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQTSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGRFDVCVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTESPSLKKRKQLTMDDYASTGKRRK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02305 1067 CDD SANT 847 891 IPR001005 -
Phac6g02305 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 54 78 - -
Phac6g02305 1067 Pfam HAND 757 839 IPR015194 GO:0003677|GO:0006338|GO:0031491
Phac6g02305 1067 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Phac6g02305 1067 Gene3D - 844 898 - -
Phac6g02305 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 745 843 - -
Phac6g02305 1067 Gene3D - 414 706 IPR027417 -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 1 93 - -
Phac6g02305 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 408 IPR027417 -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 1016 1032 - -
Phac6g02305 1067 Gene3D ISWI, HAND domain 745 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phac6g02305 1067 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Phac6g02305 1067 MobiDBLite consensus disorder prediction 1016 1067 - -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 9 26 - -
Phac6g02305 1067 Pfam SLIDE 901 1011 IPR015195 GO:0003677|GO:0005634|GO:0006338
Phac6g02305 1067 Gene3D - 932 1035 - -
Phac6g02305 1067 SMART ultradead3 189 381 IPR014001 -
Phac6g02305 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 844 898 - -
Phac6g02305 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phac6g02305 1067 FunFam Chromatin-remodeling complex ATPase 194 409 - -
Phac6g02305 1067 Gene3D - 194 409 IPR038718 -
Phac6g02305 1067 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Phac6g02305 1067 Coils Coil 1001 1032 - -
Phac6g02305 1067 Coils Coil 18 42 - -
Phac6g02305 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 932 1035 - -
Phac6g02305 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Phac6g02305 1067 CDD SF2_C_SNF 494 619 - -
Phac6g02305 1067 Gene3D iswi atpase 899 931 - -
Phac6g02305 1067 SUPERFAMILY Homeodomain-like 899 1021 IPR009057 -
Phac6g02305 1067 ProSiteProfiles SANT domain profile. 843 895 IPR017884 -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 79 93 - -
Phac6g02305 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Phac6g02305 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 414 706 - -
Phac6g02305 1067 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 1051 - -
Phac6g02305 1067 SMART sant 946 1007 IPR001005 -
Phac6g02305 1067 SMART sant 844 893 IPR001005 -
Phac6g02305 1067 Coils Coil 85 112 - -
Phac6g02305 1067 SMART helicmild6 524 608 IPR001650 -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 141 173 - -
Phac6g02305 1067 MobiDBLite consensus disorder prediction 1043 1067 - -
Phac6g02305 1067 SUPERFAMILY Homeodomain-like 847 897 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02305 Phac-Chr6 22139355 22151083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02305 214 635 RAD5 or RAD16-like Gene Family AT1G02670 27.129 2.99e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac6g02305 SNF2_N 1.1e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02305 K11654 - gmx:100782649 1950.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02305 6 22139355 22151083 Phac6g02305 6 22139355 22151083 ECH
Phac3g01555 3 17829498 17858206 Phac6g02305 6 22139355 22151083 PCT