Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02276 ATGCAAGCTCCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGCTGTCCCACTGCGAAACAAAGAAGTTTCAGATAGTGGACCCAGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGTGAGGGCTCTGGATCATTCTCAAAGTTTCACTAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGTGGATGGAGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGGGAGCTGCAGACAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATATACTGAACAAATTAAGCCACATAAAGAGGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACTCGTAGTGAACAGGAGCAACAAGATCCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTTCCGATGAGGAAATTCCTGAAGAGGAAGCAGTGTGCAGAATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGACTGGTACACGAAGAATGTTTAATTAAATGGTTTAGCACAAAAAGAGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCGATTCAACGACAAAACAGACAGACGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATTATTATTTCGGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTGGCTTTTACTGTGCATCTATTTTATACAGTGTTGCATCTGATGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGACCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCTCTCATGATGATCACCCAGTATGA 1269 0.4247 MQAPQPSLTDEAPEISHQAVPLRNKEVSDSGPSGRRPDISLQVPPRPIGFGSTSGVRALDHSQSFTKGISSSRGFLRALSFKRKGNVVDGERSSLLSSDPKGAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYTEQIKPHKEVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDPNDDQITPVPVEVTSDEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKRDKKCDVCRQEVQNLPVTLLRVTSSIQRQNRQTQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIISAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAFTVHLFYTVLHLMAIYAILLSSVLGFGIAMTINYAYIQFVTWRLQVSHDDHPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02276 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Phac6g02276 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Phac6g02276 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Phac6g02276 422 PANTHER OS02G0165000 PROTEIN 56 416 - -
Phac6g02276 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Phac6g02276 422 SUPERFAMILY RING/U-box 210 264 - -
Phac6g02276 422 MobiDBLite consensus disorder prediction 1 55 - -
Phac6g02276 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Phac6g02276 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02276 Phac-Chr6 21994995 21999876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02276 152 321 C3H Transcription Factor Family AT2G37950 26.087 3.85e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02276 - - vun:114188987 766.533