Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02273 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCTGAAGACCCTTCCTCCATTTGGGACTTCTCCTACCTCCTTGATTTCAACCTCGACGAAGACCACACCAATAACTCTCTCCCTATCTCTTCTCCCTTCAACGACGCTCCCGAGATCCCTAATGACCGGGTCCGAAAGCGTGACCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCAGGTCCCCTGCGCATGCCCCGAACTCGACGCCAAGCTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACCGCGCGTGCATCCTCATCCGCCCGATGCCAGGTCCCTGGCTGCGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACATAGAGTCTGCCTCCGCTGCGCCAATGCCACCACCGTCATCCTCCACGGCGAGTCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGACGAAGGGAAACGAAGTTGCAGAAGGAAGTTGGAGCGGCATAACACGCGAAGGCGGAGAAAGCCCTTGGTGGACTCCGGATGTGCTTCTGTCGTCGAACTTGAAGCTGTTACTCAGAATGAGGAAAGCAATTATGATCCGGAAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACGCCGTAGTAGTGTTGCCAGATCATGAAGATGAGCCTGTTCCCATTCTGAGATCAGCTCCTGATGCCCAGAATGTTAATAGTGATAGTGTTGTGTCTTTTCCTGTTTCGGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGTCTACACGTCTATGTGCCAAACAGGTCGTATTTCGTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGCATGCCTGTAGAGTTGGAGGGTTATATCCGTCCTGGGTGCACGATTTTGACCAGTTTTATTGCAATGCCTGACATTATGTGGATAAATTTACGGAAAGACTCTTTGGAATATGTGAACAAACTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGGAATGCACTAGTTCATCTAAATGGCACAATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAAAGTCGAGGTAAACTTGCAGGCACCGAGACTTCATTATGTTCATCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTTCGGCTGCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCTCCACATAGCTGGACCGAAGAAAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCGGCATTTATTGAGGTGGAGAATGAATGCGGTTTATCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAATTTGTTCTGAAATGAAGACACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAAACAATTCCGGTCTGCATCTGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGTCACACATCGTCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATCGAAAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGAAAAAAATATTACCAAATTTGATAATCTTGACAAAAAGCATGAAATCCAATTTTTTGATTAATAGGACGAGTTATGTTGATACAAGGCAACTCCTGAATCACATACATGATGCTCAAATTGCCATATATCAGAAACATCAGAAAAATGGAAGTATAATTATGCAGCCTGAAATGGAAAGCCTTAAACTTGAACAGGGATGCTCCGAAGATTGCAAGATCGCAATTAACAGTCAGGGAATCCTGTCAAGAGCAGATGCAAAGTGGGGAGTACTGAAAAATTTAACTTCTAATGACAGAAAAGAAAGAATACCTCTTTTGAAGAGAGAGATTATAATGAATGTGGAAGAGTTGCCTGAAAGATATGGTCGTGGATGTTTAGGCAGAGGGTTCTTGACACCTCGACCAGCTATTTTTGTGATTGTTTCGATTGCTGTTTGTCTTGGAGTTTGTGTAGCCGTCCTTCATCCAGGAAGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2289 0.4404 MEPQQSLPPMDDSEDPSSIWDFSYLLDFNLDEDHTNNSLPISSPFNDAPEIPNDRVRKRDPRLTCSNFLAGQVPCACPELDAKLEDEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHRVCLRCANATTVILHGESKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVDSGCASVVELEAVTQNEESNYDPEAGKDCSNLSNEINAVVVLPDHEDEPVPILRSAPDAQNVNSDSVVSFPVSGETRVNSGNTSNSPSYCDNKSVYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPDIMWINLRKDSLEYVNKLVAPGKMLSGRGNALVHLNGTIFRVMKDGTSVTKVEVNLQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEENISCAFDNQLYKIYVPHTEESLFGPAFIEVENECGLSNFIPVLIADKEICSEMKTLQQKLDSSLLSKQFRSASGGSICSSCETFTLSHTSSDLLVDIAWLLKDTTSENFDRVMTASQIERYCHLLDFLMCNESTVMLKKILPNLIILTKSMKSNFLINRTSYVDTRQLLNHIHDAQIAIYQKHQKNGSIIMQPEMESLKLEQGCSEDCKIAINSQGILSRADAKWGVLKNLTSNDRKERIPLLKREIIMNVEELPERYGRGCLGRGFLTPRPAIFVIVSIAVCLGVCVAVLHPGRVTELAVSVRRCLFNY* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02273 762 Pfam SBP domain 106 180 IPR004333 GO:0003677
Phac6g02273 762 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Phac6g02273 762 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Phac6g02273 762 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Phac6g02273 762 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 582 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02273 Phac-Chr6 21947922 21962345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02273 8 756 SBP-box Gene Family AT5G18830 46.650 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac6g02273 SBP 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02273 - - gmx:100776034 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02273 6 21947922 21962345 Phac6g02273 6 21947922 21962345 ECH