Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02191 ATGGGTATATCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCGCCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCCACCACCTTCCCCCTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACGCCCCACACAGCAACAACTATGCCGCTCCCCCTCCCTTGGCTCCACCACCACAGCCGCCACCGCCGCAGACCCATTCCATCTCCTTCTATTACCCCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGCGCCCAATCGCCTTCACTACCAACCTTTCTACCACCCTCAACCTAGCGTGTGGCCCGCGGCCACTGGCGCCTCTGACTCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAGAAGATAAGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGATTTGTTCCATTATTTCCCGATGCATTTCAGCCAGTCAGAATACCCTTTCAGAAAGGAGTTGGCCAGACATTTTCCCAGCCTCCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCAGAAGATGAAACTTTGGGTGATTCCGTGCTAGATGCATCACCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTCCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTATTCGATATGAGTTGAGAGAGTTATTTGGAATAGCAAGCTCATCCGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGCATGTGCAGTGAGTGTGCGAATGCTCTGCGAATTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAATTCATTGAGATCAAAGTAAACAGTGGCAATCAATGA 1143 0.4847 MGISWSGRRRNNYIQNPPPPLPPPPYYYPPQSHHLPPPPPPQGYFLPSTTTYAPHSNNYAAPPPLAPPPQPPPPQTHSISFYYPNQSAYPNYANSAPNRLHYQPFYHPQPSVWPAATGASDSTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVFYFAKEEEKCRFVPLFPDAFQPVRIPFQKGVGQTFSQPPGTGIDLGFFELDDLSKPSPEEDVFPLVICAETSLKTPSEDETLGDSVLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGIRYELRELFGIASSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANALRIQSNKCPICRQSIEEFIEIKVNSGNQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02191 380 MobiDBLite consensus disorder prediction 60 78 - -
Phac6g02191 380 SUPERFAMILY RING/U-box 318 370 - -
Phac6g02191 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 374 IPR013083 -
Phac6g02191 380 MobiDBLite consensus disorder prediction 15 45 - -
Phac6g02191 380 PANTHER MAHOGUNIN 60 375 IPR045194 GO:0061630
Phac6g02191 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Phac6g02191 380 MobiDBLite consensus disorder prediction 1 80 - -
Phac6g02191 380 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Phac6g02191 380 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
Phac6g02191 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Phac6g02191 380 SMART ring_2 325 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02191 Phac-Chr6 21452131 21456605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02191 127 380 C3H Transcription Factor Family AT3G06140 61.176 6.04e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02191 - - vra:106775674 628.246